View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14353_low_61 (Length: 286)
Name: NF14353_low_61
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_61 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 30075384 - 30075651
Alignment:
| Q |
1 |
acagaaaatccaattccaa-tgcgttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattaca |
99 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30075384 |
acagaaaatccaattccaaatgcattgagacaagatataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattaca |
30075483 |
T |
|
| Q |
100 |
atgataccaaagctaattaggcaaatttcttgcaagata--caaataatgtatccctaaacctctaattacacacaaattaatacaacctgcatttgcat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
30075484 |
atgataccaaagctaattaggcaaatttcttgcaagatatacaaataatgtatccctaaacctctaagtacacacaaattaatacaacctgcatttgcat |
30075583 |
T |
|
| Q |
198 |
ctgatacttcaaaagctcgcacccaacgaagaagaaaacgaagaactaagtatttgaaatctgaatct |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30075584 |
ctgatacttcaaaagctcgcacccaacgaagaagaaaacgaagaactgagtatttgaaatctgaatct |
30075651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 30044203 - 30043932
Alignment:
| Q |
1 |
acagaaaatccaattccaa-tgcgttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattaca |
99 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30044203 |
acagaaaatccaattccaaatgcgttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattaca |
30044104 |
T |
|
| Q |
100 |
atgataccaaagctaattaggcaaatttcttgcaag--atacaaataatgtatccctaaacctctaat----tacacacaaattaatacaacctgcattt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
30044103 |
atgataccaaagctaattaggcaaatttcttgcaagatatacaaataatgtatccctaaacccctaattaagtacacacaaattaatacaacctgcattt |
30044004 |
T |
|
| Q |
194 |
gcatctgatacttcaaaagctcgcacccaacgaagaagaaaacgaagaactaagtatttgaaatctgaatct |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
30044003 |
gcatctgatacttcaaaagctcgcacccaacgaagaagaaaacgaagaactgagtatttgaaatcagaatct |
30043932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 30049366 - 30049095
Alignment:
| Q |
1 |
acagaaaatccaattccaa-tgcgttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattaca |
99 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049366 |
acagaaaatccaattccaaatgcgttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattaca |
30049267 |
T |
|
| Q |
100 |
atgataccaaagctaattaggcaaatttcttgcaag--atacaaataatgtatccctaaacctctaat----tacacacaaattaatacaacctgcattt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
30049266 |
atgataccaaagctaattaggcaaatttcttgcaagatatacaaataatgtatccctaaacccctaattaagtacacacaaattaatacaacctgcattt |
30049167 |
T |
|
| Q |
194 |
gcatctgatacttcaaaagctcgcacccaacgaagaagaaaacgaagaactaagtatttgaaatctgaatct |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
30049166 |
gcatctgatacttcaaaagctcgcacccaacgaagaagaaaacgaagaactgagtatttgaaatcagaatct |
30049095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 30140410 - 30140139
Alignment:
| Q |
1 |
acagaaaatccaattccaa-tgcgttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattaca |
99 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30140410 |
acagaaaatccaattccaaatgcgttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattaca |
30140311 |
T |
|
| Q |
100 |
atgataccaaagctaattaggcaaatttcttgcaag--atacaaataatgtatccctaaacctctaat----tacacacaaattaatacaacctgcattt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
30140310 |
atgataccaaagctaattaggcaaatttcttgcaagatatacaaataatgtatccctaaacccctaattaagtacacacaaattaatacaacctgcattt |
30140211 |
T |
|
| Q |
194 |
gcatctgatacttcaaaagctcgcacccaacgaagaagaaaacgaagaactaagtatttgaaatctgaatct |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
30140210 |
gcatctgatacttcaaaagctcgcacccaacgaagaagaaaacgaagaactgagtatttgaaatcagaatct |
30140139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 30239415 - 30239214
Alignment:
| Q |
22 |
cgttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattacaatgataccaaagctaattaggc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30239415 |
cgttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattacaatgattccaaagctaattaggc |
30239316 |
T |
|
| Q |
122 |
aaatttcttgcaagatacaaataatgtatccctaaacctctaattacacacaaattaatacaacctgcatttgcatctgatacttcaaaagctcgcaccc |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30239315 |
aaatttcttgcaagatacaaataatgtatccctaaacctctaagtacacacaaattaatacaacctgcatttgcatctgatacttcaaaagctcgcaccc |
30239216 |
T |
|
| Q |
222 |
aa |
223 |
Q |
| |
|
|| |
|
|
| T |
30239215 |
aa |
30239214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 30088202 - 30088025
Alignment:
| Q |
23 |
gttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattacaatgataccaaagctaattaggca |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30088202 |
gttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattacaatgataccaaagctaattaggca |
30088103 |
T |
|
| Q |
123 |
aatttcttgcaagatacaaataatgtatccctaaacctctaattacacacaaattaatacaacctgcatttgcatctgatac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
30088102 |
aatttcttgcaagatacaaataatgtatccctaaacccctaagtacacaca----aatacaacctgcatttacatctgatac |
30088025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 30016949 - 30017150
Alignment:
| Q |
1 |
acagaaaatccaattccaa-tgcgttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattaca |
99 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30016949 |
acagaaaatccaattccaaatgctttgagacaagctataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattaca |
30017048 |
T |
|
| Q |
100 |
atgataccaaagctaattaggcaaatttcttgcaaga-tacaaataatgtatccctaaacctctaattacacacaaattaatacaacctgcatttgcatc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
30017049 |
atgataccaaagctaattaggcaaatttcttgcaagattacaaataatgcatccctaaatccctaagtacacaca----aatacaatctgcatttgcatc |
30017144 |
T |
|
| Q |
199 |
tgatac |
204 |
Q |
| |
|
|||||| |
|
|
| T |
30017145 |
tgatac |
30017150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 30124888 - 30124687
Alignment:
| Q |
1 |
acagaaaatccaattccaa-tgcgttgagacaagttataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattaca |
99 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30124888 |
acagaaaatccaattccaaatgctttgagacaagctataccaatgattcctaaaaagaagaagttataccaaagagacacttttaagtttattaattaca |
30124789 |
T |
|
| Q |
100 |
atgataccaaagctaattaggcaaatttcttgcaaga-tacaaataatgtatccctaaacctctaattacacacaaattaatacaacctgcatttgcatc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
30124788 |
atgataccaaagctaattaggcaaatttcttgcaagattacaaataatgcatccctaaatccctaagtacacaca----aatacaatctgcatttgcatc |
30124693 |
T |
|
| Q |
199 |
tgatac |
204 |
Q |
| |
|
|||||| |
|
|
| T |
30124692 |
tgatac |
30124687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 30017151 - 30017192
Alignment:
| Q |
224 |
cgaagaagaaaacgaagaactaagtatttgaaatctgaatct |
265 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30017151 |
cgaagaagaaaacgaagaactgagtatttgaaatctgaatct |
30017192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 30088024 - 30087983
Alignment:
| Q |
224 |
cgaagaagaaaacgaagaactaagtatttgaaatctgaatct |
265 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30088024 |
cgaagaagaaaacgaagaactgagtatttgaaatctgaatct |
30087983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 30124686 - 30124645
Alignment:
| Q |
224 |
cgaagaagaaaacgaagaactaagtatttgaaatctgaatct |
265 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30124686 |
cgaagaagaaaacgaagaactgagtatttgaaatctgaatct |
30124645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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