View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_62 (Length: 285)
Name: NF14353_low_62
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 52145426 - 52145694
Alignment:
| Q |
1 |
ggtcattggcagacagggcagtacaacgagttgtgttatcatttgttacctcaaatttacacttatttggacacatgtataacttagttccttcatcttc |
100 |
Q |
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| T |
52145426 |
ggtcattggcagacagggcagtacaacgagttgtgttatcatttgttacctcaaatttacacttatttggacacatgtataacttagttccttcatcttc |
52145525 |
T |
|
| Q |
101 |
gtcatcaacgtcttcattctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgtttgaaatggttgc |
200 |
Q |
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| T |
52145526 |
gtcatcaacgtcttcattctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgtttgaaatggttgc |
52145625 |
T |
|
| Q |
201 |
atgcaattttggttgaggttttcaacactctgatacagatttcctaaactaccaaccataccatttgtg |
269 |
Q |
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| T |
52145626 |
atgcaattttggttgaggttttcaacactctgatacagatttcctaaactaccaatcatgccatttgtg |
52145694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 114 - 265
Target Start/End: Original strand, 52142021 - 52142172
Alignment:
| Q |
114 |
tcattctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgtttgaaatggttgcatgcaattttggt |
213 |
Q |
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| T |
52142021 |
tcattctgggtaaggaatcctgaaatttcagttgacgagctttgagctcttgggtttaagagtacatccttagtttgatctggtagcatgtaattctggt |
52142120 |
T |
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| Q |
214 |
tgaggttttcaacactctgatacagatttcctaaactaccaaccataccatt |
265 |
Q |
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| T |
52142121 |
tgaggttttcaacactctcatacagattccctaagctaccaaccatgccatt |
52142172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 117 - 267
Target Start/End: Complemental strand, 17522563 - 17522413
Alignment:
| Q |
117 |
ttctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgtttgaaatggttgcatgcaattttggttga |
216 |
Q |
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||||| |||||||| |||| |||||||||||| ||||||||||||||||||||| | |||||||||||||| |||| |||||||||| || |||| |
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| T |
17522563 |
ttctgagtaaggaatcctgcgatttcagttgacgagctttgagctcttgggtttaagagaacatccttcgtttgttctggtagcatgcaattctgattga |
17522464 |
T |
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| Q |
217 |
ggttttcaacactctgatacagatttcctaaactaccaaccataccatttg |
267 |
Q |
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| T |
17522463 |
ggttttcaacactctcatacagattccctaagctaccaaccatgccatttg |
17522413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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