View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_66 (Length: 268)
Name: NF14353_low_66
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 30240574 - 30240335
Alignment:
| Q |
17 |
agatgaaccattcaaattttcattttcatctagttcgagtaaataatcaaaatcatactctagactgtcacatagacttggacaataataatcattatca |
116 |
Q |
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| T |
30240574 |
agatgaaccatccaaattttcattttcatatagttcgagtaaataatcaaaatcatactctagactgtcacatagacttggacaataataatcattatca |
30240475 |
T |
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| Q |
117 |
ttatcatga------acatcataatatctagtaggagtattagggagctccgcataacttaaccagaccgtaagatcagaatgagtatacatcttccttt |
210 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30240474 |
ttatcattatcatcaacatcataatatctagtaggagtattagggagctccgcataacttaaccagaccgtaagatcagaatgagtatacatcttccttt |
30240375 |
T |
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| Q |
211 |
gactttgttgacaagaattatcatgatcatagaaagtgtc |
250 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
30240374 |
gactttgttgacaagaattatcatgatcatagcaagtgtc |
30240335 |
T |
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