View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_68 (Length: 262)
Name: NF14353_low_68
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_68 |
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| [»] scaffold0433 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 3846021 - 3846276
Alignment:
| Q |
1 |
agattggaatcctaatcattcnnnnnnnnttgaatcctgattaaattgtaacatttttgtatacaacactgataaaatggaaactaaagttagtaatttt |
100 |
Q |
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| T |
3846021 |
agatttgaatcctaatcattcaaaaaaaattgaatcctgattaaattgtaacatttttgtatacaacactgataaaatggaaactaaagttagtaatttt |
3846120 |
T |
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| Q |
101 |
agtgagagatatattttttgtgagagaaatttttatttccaagatgacttgttctttgtcacatggttagaaaatttccacaagaaaaactacatatttt |
200 |
Q |
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| T |
3846121 |
agtgagagatatattttttgtgagagaaatttttatttccaagatgacttgttcttggtcacatggttagaaaatttccacaagaaaaactacatatttt |
3846220 |
T |
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| Q |
201 |
atatatatttaatgtcattgtgatgaccagtcgttcattatgtttgaatattcttc |
256 |
Q |
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| T |
3846221 |
atatatatttaatgtcattgtgatgaccagtcgttcattatgtttgaatattcttc |
3846276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0433 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 9127 - 8871
Alignment:
| Q |
1 |
agattggaatcctaatcattcnnnnnnnnttgaatcctgattaaattgtaacatttttgtatacaacactgataaaatggaaactaaagttagtaatttt |
100 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9127 |
agatttgaatcctaatcattcaaaaaaaattgaatcctgattaaattgtaacatttttgtatacaacactgataaaatggaaactaaagttagtaatttt |
9028 |
T |
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| Q |
101 |
agtgagagatatattttttgtgagagaaatttttatttc-caagatgacttgttctttgtcacatggttagaaaatttccacaagaaaaactacatattt |
199 |
Q |
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| T |
9027 |
agtgagagatatattttttgtgagagaaatttttatttcgcaagatgacttgttcttggtcacatggttagaaaatttccacaagaaaaactacatattt |
8928 |
T |
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| Q |
200 |
tatatatatttaatgtcattgtgatgaccagtcgttcattatgtttgaatattcttc |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8927 |
tatatatatttaatgtcattgtgatgaccagtcgttcattatgtttgaatattcttc |
8871 |
T |
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