View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_69 (Length: 260)
Name: NF14353_low_69
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_69 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 41710009 - 41710257
Alignment:
| Q |
11 |
cacagaataaaagatcaattaagggtgaaacaacatttacatgtacataattgctatttttgtagaaaaggcaaatgaatagagtcgagttgtggatttc |
110 |
Q |
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| T |
41710009 |
cacagaataaaagatcaattaagggtgaaacaacatttacatgtacattattgctatttttgtagaaaaggtaaatgaatagagttgatttgtggatttc |
41710108 |
T |
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| Q |
111 |
aatagtatccgtccacatattatgccaaaatgctatatattatttatttacaaaatttcaagttgtgcaatttgtagtaaatgtttccagttcttcaaaa |
210 |
Q |
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| T |
41710109 |
aatagtatccgtccacatattatgccaaa-tgctatatattatttatttacaaaatttcaagtcgtgcaatttgtagtaaatgtttccagttcttgaaaa |
41710207 |
T |
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| Q |
211 |
gaaacctccataagaaaccatcaaacaaaataccttggacaaataaagcc |
260 |
Q |
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| T |
41710208 |
gaaacctccataagaaaccatcaaacaaaataccttggacaaataaagcc |
41710257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 14111039 - 14110815
Alignment:
| Q |
14 |
agaataaaagatcaattaagggtgaaacaacatttacatgtacataattgctat-ttttgtagaaaaggcaaatgaatagagtcgagttgtggatttcaa |
112 |
Q |
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| T |
14111039 |
agaataaaagatcaattccgg-tgaaatgacatttacatgtacataattggtaacttttgtacaaaaggtaaatgaatagagttgagttgtggatttcaa |
14110941 |
T |
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| Q |
113 |
tagtatccgtccacatattatgccaaaatgctatatattatttatttacaaaatttcaagttgtgcaatttgtagtaaatgtttccagttcttcaaaaga |
212 |
Q |
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| T |
14110940 |
tagtatccgtccacataatatgccaaa-tgctatatattatttattcacagaatgtcaagttgtgcaatttgtagtaaatgtttccagtactataaaaga |
14110842 |
T |
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| Q |
213 |
aacctccataagaaaccatcaaacaaa |
239 |
Q |
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| T |
14110841 |
aacctccataagaaaccatcaaacaaa |
14110815 |
T |
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