View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14353_low_76 (Length: 249)
Name: NF14353_low_76
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_76 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 7751943 - 7752168
Alignment:
| Q |
10 |
aagaatatttttaaaagaaataataaagagcatgcatgaatgtacttgaaacaaaaacaaacctccactactccaagtcaacagcaagtttgcagtcatt |
109 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7751943 |
aagaaaattttcaaaagaaataataaagagcatgcatgaatgtacttgaaacaaaaacaaacctccactactccaagtcaaaagcaagtttgcagtcatt |
7752042 |
T |
|
| Q |
110 |
gtgattatccatgaagttagccaatttgtcaaggtagctatgctgccaacaagtccctttatattcacaggaagtatctagaaaacaagatcaagaagta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7752043 |
gtgattatccatgaagttagccaatttgtcaaggtagctatgctgccagcaagtccctttatattcacaggaagtatctagaaaacaagatcaagaagta |
7752142 |
T |
|
| Q |
210 |
agaggttatttatgttcaaaaatgtg |
235 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
7752143 |
agaggttatttatgtttaaaaatgtg |
7752168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 7771294 - 7771384
Alignment:
| Q |
84 |
aagtcaacagcaagtttgcagtcattgtgattatccatgaagttagccaatttgtcaaggtagctatgctgccaacaagtccctttatattc |
175 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
7771294 |
aagtcaaaagcaagtt-gcagtcattgtgattatccatgaagttaacgaatttgtcaaggtggctatgctgccagcaaggtcctttatattc |
7771384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 32932968 - 32932841
Alignment:
| Q |
61 |
caaaaacaaacctccactactccaagtcaacagcaagtttgcagtcattgtgattatccatgaagttagccaatttgtcaaggtagctatgctgccaaca |
160 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| | ||||||||| | || ||| ||| | |||||| || |
|
|
| T |
32932968 |
caaacacaaacctccactgctccaagtcaaaagcaagtttgcagtcattgtgatgatccacgctactagccaattagccatggttgctgtactgccagca |
32932869 |
T |
|
| Q |
161 |
agtccctttatattcacaggaagtatct |
188 |
Q |
| |
|
|| |||||||||||||| |||||||||| |
|
|
| T |
32932868 |
agaccctttatattcactggaagtatct |
32932841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University