View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_77 (Length: 248)
Name: NF14353_low_77
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7752182 - 7752410
Alignment:
| Q |
1 |
gtgatccatgcgaatacacaagtatcttgttagtatagcactaaaacattccttatgattgatttataatctcttatgtttataaggtgaagtgaaaata |
100 |
Q |
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| T |
7752182 |
gtgatccgtgcgaatacacaagtatattgttagtatagcactaaaacattaattgt--ttgatttataatctcttatgtttataaggtgaagtgaaaata |
7752279 |
T |
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| Q |
101 |
aagtctaaattttacctcagacattataagccaagggattggtccaagtccaagagagtagccaatcaccatagcctaaaaagaaacatttgataaaatt |
200 |
Q |
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| T |
7752280 |
aagtctaaattttacctcagacattataagccaagggattggtccaagtccaagagagtagccaatcaccatagcctaaaaagaaacatttgataaaatt |
7752379 |
T |
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| Q |
201 |
gataagtacttaaactcttgaattcacatgg |
231 |
Q |
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| T |
7752380 |
gataagtacttaaatacttgaattcacatgg |
7752410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 32932617 - 32932548
Alignment:
| Q |
113 |
tacctcagacattataagccaagggattggtccaagtccaagagagtagccaatcaccatagcctaaaaa |
182 |
Q |
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| T |
32932617 |
tacctcagacattataagccaagggattggtccaagtcctagagagaacccaattaccataaccttaaaa |
32932548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 32938546 - 32938477
Alignment:
| Q |
113 |
tacctcagacattataagccaagggattggtccaagtccaagagagtagccaatcaccatagcctaaaaa |
182 |
Q |
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| T |
32938546 |
tacctcagacattataagccaagggattggtccaatgccaagagcaaaaccaattaccaaagcctaaaaa |
32938477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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