View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_78 (Length: 247)
Name: NF14353_low_78
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 3685473 - 3685619
Alignment:
| Q |
1 |
gcattcttcttctcctctcactcggttacacttggtcctcatatcatgattaattctagcaacagtttatgtaacttttaataatgtctctcaaattctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3685473 |
gcattcttcttctcctctcactcggttacacttggtcctcatatcatgattaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctg |
3685572 |
T |
|
| Q |
101 |
tttattggaatattatttagattattctatttttatgcataccaaaa |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3685573 |
tttattggaatattatttagattattctatttttatgcataccaaaa |
3685619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 3693154 - 3693334
Alignment:
| Q |
2 |
cattcttcttctcctctcactcggttacacttggtcctcatatcat-gattaattctagcaacagtttatgtaacttttaataatgtctctcaaattctg |
100 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| || |
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| T |
3693154 |
cattcttcttctcctctcactcggtcacacttcgtcctcatatcattgattaattgtagcaacagtttatgtaacttttaataatgtctt--aaattatg |
3693251 |
T |
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| Q |
101 |
tttattggaatattatttagattattctatttttatgcataccaaaaaggttattcttattttaattgaattatagattatat |
183 |
Q |
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| T |
3693252 |
tttattggaatattatttagattatgctatttttacgcataccaaaaaggttattcttattttaattgaattatagagtatat |
3693334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 3702931 - 3703107
Alignment:
| Q |
2 |
cattcttcttctcctctcactcggttacacttggtcctcatatcatgattaattctagcaacagtttatgtaacttttaataatgtctctcaaattctgt |
101 |
Q |
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|||| |||||||| |||||||| || || ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3702931 |
cattgttcttctcgtctcactcagtcactcttggtcctcatatcatgattaattgtggcaacagtttatgtaacttttaataatgtctc--aaattctgt |
3703028 |
T |
|
| Q |
102 |
ttattggaatattatttagattattctatttttatgcataccaaaaaggttattcttattttaattgaattatagattatat |
183 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3703029 |
ttattgggatatt---tagattattctatttttatgcataccaaaaaggttattcttattttaattgaattatagataatat |
3703107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 3705862 - 3706012
Alignment:
| Q |
2 |
cattcttcttctcctctcactcggttacacttggtcctcatatcatgattaattctagcaacagtttatgtaacttttaataatgtctctcaaattctgt |
101 |
Q |
| |
|
|||| ||||||||||||||||| || | |||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
3705862 |
cattgttcttctcctctcactcagtcattcttggtcctcttatcattattaattgtagcaacagtttatgtaacttttaataatg--tctcaacttctgt |
3705959 |
T |
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| Q |
102 |
ttattggaatattat-----ttagattattctatttttatgcataccaaaaag |
149 |
Q |
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|||||||||| |||| ||||||||||||||||| ||| ||||||||||| |
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| T |
3705960 |
ttattggaatgttatttagattagattattctattttcatgtataccaaaaag |
3706012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 3685914 - 3685981
Alignment:
| Q |
180 |
atataagatgagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgc |
247 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3685914 |
atataagaggagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgc |
3685981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 3700673 - 3700793
Alignment:
| Q |
61 |
aacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatatt-atttagatta-----ttctatttttatgcataccaaaaaggttat |
154 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||||| |
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| T |
3700673 |
aacagtttatgtaactttt--taatgtctc--aaattatgtttattggaatatttatttagattaaactattctatttttatgtataccaataaggttat |
3700768 |
T |
|
| Q |
155 |
tcttattttaattgaattatagatt |
179 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
3700769 |
tcttattttaattgaattatagatt |
3700793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 3694957 - 3695027
Alignment:
| Q |
36 |
tcctcatatcatgattaattctagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattgga |
109 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
3694957 |
tcctcatatcatgattaattgtagcaacagtttatgtaacttttaataatgtctc---aaatctgtttattgga |
3695027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 3651521 - 3651479
Alignment:
| Q |
46 |
atgattaattctagcaacagtttatgtaacttttaataatgtc |
88 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3651521 |
atgattaattgtagcaacagtttatgtaacttttaataatgtc |
3651479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 3675510 - 3675554
Alignment:
| Q |
203 |
taaaggataatgatatttgcatcgaagaatatagatcacgaacgc |
247 |
Q |
| |
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|||||| |||||||||||| | ||||||||||||||||||||||| |
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| T |
3675510 |
taaaggttaatgatatttgtagcgaagaatatagatcacgaacgc |
3675554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 3693681 - 3693721
Alignment:
| Q |
180 |
atataagatgagagggccgaaaataaaggataatgatattt |
220 |
Q |
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|||||||| | ||||||||||| |||||||||||||||||| |
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| T |
3693681 |
atataagacgcgagggccgaaattaaaggataatgatattt |
3693721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 176
Target Start/End: Complemental strand, 1287457 - 1287426
Alignment:
| Q |
145 |
aaaaggttattcttattttaattgaattatag |
176 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
1287457 |
aaaaggttattcttattttaattgaattatag |
1287426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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