View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14353_low_79 (Length: 246)

Name: NF14353_low_79
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14353_low_79
NF14353_low_79
[»] chr2 (6 HSPs)
chr2 (56-232)||(8581059-8581234)
chr2 (39-155)||(9271665-9271778)
chr2 (40-104)||(10346655-10346716)
chr2 (39-118)||(10334648-10334724)
chr2 (39-104)||(10351125-10351187)
chr2 (39-104)||(9287529-9287591)
[»] chr3 (3 HSPs)
chr3 (36-196)||(39426835-39426993)
chr3 (79-159)||(39426177-39426258)
chr3 (199-238)||(39427016-39427055)
[»] chr5 (1 HSPs)
chr5 (36-238)||(36223657-36223854)
[»] chr6 (1 HSPs)
chr6 (39-153)||(10856969-10857080)
[»] chr4 (2 HSPs)
chr4 (126-196)||(560573-560637)
chr4 (51-118)||(26573926-26573990)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 8581234 - 8581059
Alignment:
Q  56 atattgacattttaaattgatggtgtgatatgatgctcatgcttcacataccaatgccaaaatctttgtagccaaaatagcttttatcatttctactaaa 155  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8581234 atattgacattt-aaattgatggtttgatatgatgctcatgcttcacataccaaagccaaaatctttgtagccaaaatagcttttatcatttctactaaa 8581136  T
Q  156 gatccataagaataggaattatcaaatgcataagaatccataaaagaaaaatccataatatataagaatccataaga 232  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8581135 gatccataagaaaaggaattatcaaatgcataagaacccataaaagaaaaatccataatatataagaatccataaga 8581059  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 9271665 - 9271778
Alignment:
Q  39 taaatcgaccattttcaatattgacattttaaattgatggtgtgatatgatgctcatgcttcacataccaatgccaaaatctttgtagccaaaatagctt 138  Q
    |||||||||||||||||||||||||| | |||||||||  ||||| |||| | ||||||||||||| || ||||||||||||||   || | |||||| |    
T  9271665 taaatcgaccattttcaatattgaca-tctaaattgat--tgtgacatgaagttcatgcttcacatgccgatgccaaaatctttacggctataatagcgt 9271761  T
Q  139 ttatcatttctactaaa 155  Q
    |||||| ||| ||||||    
T  9271762 ttatcaattccactaaa 9271778  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 10346655 - 10346716
Alignment:
Q  40 aaatcgaccattttcaatattgacattttaaattgatggtgtgatatgatgctcatgcttcacat 104  Q
    ||||||||||||||| |||||||||| | ||||||||||||  ||||||||||||||||||||||    
T  10346655 aaatcgaccattttcgatattgacatct-aaattgatggtg--atatgatgctcatgcttcacat 10346716  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 10334648 - 10334724
Alignment:
Q  39 taaatcgaccattttcaatattgacattttaaattgatggtgtgatatgatgctcatgcttcacataccaatgccaaaat 118  Q
    |||||||||||||||||||||||||| | || |||||||  ||||||||||||||||||||| ||| || || |||||||    
T  10334648 taaatcgaccattttcaatattgaca-tctacattgatg--gtgatatgatgctcatgcttcgcatgcctataccaaaat 10334724  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 10351125 - 10351187
Alignment:
Q  39 taaatcgaccattttcaatattgacattttaaattgatggtgtgatatgatgctcatgcttcacat 104  Q
    |||||||||||||||||||||||||| | || |||||||  ||||||||||| |||||||||||||    
T  10351125 taaatcgaccattttcaatattgaca-tctacattgatg--gtgatatgatgatcatgcttcacat 10351187  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 9287529 - 9287591
Alignment:
Q  39 taaatcgaccattttcaatattgacattttaaattgatggtgtgatatgatgctcatgcttcacat 104  Q
    |||||| |||||||||||| ||||||| | ||||||||  ||||||||||||||||| ||||||||    
T  9287529 taaatcaaccattttcaattttgacatct-aaattgat--tgtgatatgatgctcatacttcacat 9287591  T

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Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 39426835 - 39426993
Alignment:
Q  36 ttctaaatcgaccattttcaatattgacattttaaattgatggtgtgatatgatgctcatgcttcacataccaatgccaaaa-tctttgtagccaaaata 134  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||| || ||| ||||| |||||| ||||||||||    
T  39426835 ttctagatcgaccattttcaatattgacattt-aaattgatggtg--atatgatgctcaagcttcacatgcctatgtcaaaaatctttgcagccaaaata 39426931  T
Q  135 gcttttatcatttctactaaagatccataagaataggaattatcaaatgcataagaatccat 196  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||    
T  39426932 gcttttatcatttctactaaagatccgtaagaataagaattatcaaatccataagaatccat 39426993  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 39426177 - 39426258
Alignment:
Q  79 tgtgatatgatgctcatgcttcacataccaatgccaaaa-tctttgtagccaaaatagcttttatcatttctactaaagatc 159  Q
    |||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  39426177 tgtgatatgatgctcatgcttcacatgcctatgccaaaaatctttgcagccaaaatagcttttatcatttctactaaagatc 39426258  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 39427016 - 39427055
Alignment:
Q  199 aagaaaaatccataatatataagaatccataagaattatc 238  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39427016 aagaaaaatccataatatataagaatccataagaattatc 39427055  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 36223657 - 36223854
Alignment:
Q  36 ttctaaatcgaccattttcaatattgacattttaaattgatggtgtgatatgatgctcatgcttcacataccaatgccaaaa-tctttgtagccaaaata 134  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||  |||| |||||||||||| |||| || | ||||||| | ||||  |||||||||    
T  36223657 ttctaaatcgacaattttcaatattgacatct-aaattgatggtgatatat-atgctcatgcttaacatgcctaagccaaaaatgtttgcggccaaaata 36223754  T
Q  135 gcttttatcatttctactaaagatccataagaataggaattatcaaatgcataagaatccataaaagaaaaatccataatatataagaatccataagaat 234  Q
    ||||| |||||||||||||||||||| ||||||||  ||| | |  ||    |||||| |||| ||||||||||||||||||||||||||||||||| ||    
T  36223755 gctttcatcatttctactaaagatccgtaagaata--aatgagc--attgtcaagaattcatacaagaaaaatccataatatataagaatccataagcat 36223850  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 10857080 - 10856969
Alignment:
Q  39 taaatcgaccattttcaatattgacattttaaattgatggtgtgatatgatgctcatgcttcacataccaatgccaaaatctttgtagccaaaatagctt 138  Q
    |||||||||||| || |||||| |||| | ||||||| ||||  ||||||||||||||||| |||| || ||||||||||||||| ||||||||||||||    
T  10857080 taaatcgaccatattgaatatttacatct-aaattgaaggtg--atatgatgctcatgctttacatgcctatgccaaaatctttgcagccaaaatagctt 10856984  T
Q  139 ttatcatttctacta 153  Q
    |||||| ||| ||||    
T  10856983 ttatcagttccacta 10856969  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 560573 - 560637
Alignment:
Q  126 gccaaaatagcttttatcatttctactaaagatccataagaataggaattatcaaatgcataagaatccat 196  Q
    |||||||||||||||||||||||||||||      ||||||||| ||||||||||  |||||| |||||||    
T  560573 gccaaaatagcttttatcatttctactaa------ataagaataagaattatcaagagcataataatccat 560637  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 26573926 - 26573990
Alignment:
Q  51 tttcaatattgacattttaaattgatggtgtgatatgatgctcatgcttcacataccaatgccaaaat 118  Q
    ||||||||||||||| | | ||||||||||  |||||||||||| ||||||||| || ||||||||||    
T  26573926 tttcaatattgacatct-acattgatggtg--atatgatgctcaagcttcacatgcctatgccaaaat 26573990  T

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