View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_83 (Length: 236)
Name: NF14353_low_83
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_83 |
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| [»] scaffold0433 (1 HSPs) |
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Alignment Details
Target: scaffold0433 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 9331 - 9435
Alignment:
| Q |
118 |
taatttaaacaattagactcaataaaatatagattatccctttnnnnnnnttaaataaatacttagtccctctgnnnnnnnngtaaatatagattagtca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9331 |
taatttaaacaattagactcaataaaatatagattatccctttaaaaaaattaaataaatacttagtccctctaaaaaaaaagtaaatatagattagtca |
9430 |
T |
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| Q |
218 |
aagtt |
222 |
Q |
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||||| |
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| T |
9431 |
aagtt |
9435 |
T |
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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 3845817 - 3845713
Alignment:
| Q |
118 |
taatttaaacaattagactcaataaaatatagattatccctttnnnnnnnttaaataaatacttagtccctctgnnnnnnnngtaaatatagattagtca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3845817 |
taatttaaacaattagactcaataaaatatagattatccctttaaaaaaattaaataaatacttagtccctctaaaaaaaaagtaaatatagattagtca |
3845718 |
T |
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| Q |
218 |
aagtt |
222 |
Q |
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||||| |
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| T |
3845717 |
aagtt |
3845713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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