View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_9 (Length: 655)
Name: NF14353_low_9
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 241 - 502
Target Start/End: Complemental strand, 30652524 - 30652265
Alignment:
| Q |
241 |
cctcatcaaagagctaagtacaaacggttacacatttccaaaatccaaatgactacttccttgattttcttctgctttcttctctccgtctctgtcacag |
340 |
Q |
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| T |
30652524 |
cctcatcaaagagctaagcacaaacggttacacatttccaaaatccaaatgactacttccttgattttcttctgctttcttctctccgtctctgtcacag |
30652425 |
T |
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| Q |
341 |
ccacaggtactcttccagctactctccacnnnnnnnnatgcacatatatatattctttgaaacactgaacatgacactgacacgtaaacacgagtaataa |
440 |
Q |
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| T |
30652424 |
ccacaggtactcttctagctactcttcacttttttttatgcac--atatatattctttgaaacagtgaaaatgacactgacacgtaaacactactgataa |
30652327 |
T |
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| Q |
441 |
cagtttgaaaaacataagtgatttaataagattgtttttgaattaggcatcgtttcatctta |
502 |
Q |
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| T |
30652326 |
cagtttgaaaaacataagtgatttaataagattgtttttgaatcaggcatcgtttcatctta |
30652265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 30652768 - 30652586
Alignment:
| Q |
1 |
aaaaagagtagatctgtgttgtgagttgtgattaaacaaaaggatatgaaacgtgatggagaaattttagaagtggtgctgggtggaaaacaatcaaagg |
100 |
Q |
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| T |
30652768 |
aaaaagagtagagctgtgttgtgaggtgtgattaaacaaaaggatatgaaacgtgatggagaaattttagaagtggtgctgggtggaaaacaatcaaagg |
30652669 |
T |
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| Q |
101 |
gctcctagtctctttagcaaaacggttatcaaacacataatgcacaaaatggctaaaaagaaggaaacaaatgacaaccacgt |
183 |
Q |
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| T |
30652668 |
gcttctagtctctttagcaaaacggttatcaaacacataatgcacaaaatggctaaaaagaaggaaacaaatgacaaccacgt |
30652586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 499 - 642
Target Start/End: Complemental strand, 30652217 - 30652074
Alignment:
| Q |
499 |
cttaggttatttgtgttaataatattaggtgttgttaaggatggaaacgggacacaactcatactcgtaaacaactgcaaggaaagtgtatggccaggaa |
598 |
Q |
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| T |
30652217 |
cttatgttatttgtgttaataatattaggtgttgttaaggatggaaacgggacacaactcatactcgtaaacaactgcaaggaaagtgtatggccaggaa |
30652118 |
T |
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| Q |
599 |
ttctcagcaatgaaggacacccttcaatcaaagatggtggattt |
642 |
Q |
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| T |
30652117 |
ttctcagcaatgaaggacacccttcaatcaaagatggcggattt |
30652074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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