View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14353_low_92 (Length: 208)

Name: NF14353_low_92
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14353_low_92
NF14353_low_92
[»] chr4 (4 HSPs)
chr4 (1-191)||(34967164-34967357)
chr4 (10-191)||(9117516-9117699)
chr4 (10-191)||(54207309-54207492)
chr4 (1-191)||(27742664-27742856)
[»] chr7 (2 HSPs)
chr7 (10-191)||(16849879-16850062)
chr7 (9-191)||(31738762-31738956)
[»] chr3 (4 HSPs)
chr3 (10-191)||(11031561-11031744)
chr3 (10-191)||(18319677-18319860)
chr3 (10-191)||(46920179-46920362)
chr3 (12-191)||(52126214-52126405)
[»] chr1 (2 HSPs)
chr1 (10-191)||(38007072-38007255)
chr1 (9-191)||(51083432-51083626)
[»] chr8 (2 HSPs)
chr8 (10-191)||(3428552-3428735)
chr8 (10-191)||(11465655-11465838)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 34967357 - 34967164
Alignment:
Q  1 agtgtattgagaaattaattggcagttgaaagaacatggt-ggtagtggggtttacatatagcaaggcaaatgtcattcgtacgaataaaacattccaac 99  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||||||||||||||| || ||||||||||| |||||    
T  34967357 agtgtattgagaaattaattggcagttgaaaaaacatggttggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacatcccaac 34967258  T
Q  100 tcctcttacatgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    |||| || ||||||||||||||||| |||||||| ||||||||| ||| ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  34967257 tcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctac 34967164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 9117699 - 9117516
Alignment:
Q  10 agaaattaattggcagttgaaagaacatggtggtagtggggtttacatatagcaaggcaaatgtcattcgtacgaataaaacattccaactcctcttaca 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||| || ||    
T  9117699 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 9117600  T
Q  110 tgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    ||||||||||||| | |||||||| ||||||||| ||| ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  9117599 tgggaataaaaatagggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctac 9117516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 54207492 - 54207309
Alignment:
Q  10 agaaattaattggcagttgaaagaacatggtggtagtggggtttacatatagcaaggcaaatgtcattcgtacgaataaaacattccaactcctcttaca 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||| || ||    
T  54207492 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 54207393  T
Q  110 tgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    ||||||||||||| | |||||||| ||||||||| ||| ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  54207392 tgggaataaaaatagggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctac 54207309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 27742664 - 27742856
Alignment:
Q  1 agtgtattgagaaattaattggcagttgaaagaacatggtggtagtggggtttacatatagcaaggcaaatgtcattcgtacgaataaaacattccaact 100  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||    
T  27742664 agtgtattgagaaattaattggtagttgaaaatacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaact 27742763  T
Q  101 cctcttacatgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    ||| || ||||||||||||||||| |||||||| ||||||||| |||  || ||||||| |||| ||| ||||||||||||||||||||||||    
T  27742764 cctttttcatgggaataaaaatggggagatcatgggttaaaaattttcatgggtataatctgttcccaggtatatttttcttttaccttctac 27742856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 16849879 - 16850062
Alignment:
Q  10 agaaattaattggcagttgaaagaacatggtggtagtggggtttacatatagcaaggcaaatgtcattcgtacgaataaaacattccaactcctcttaca 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||| || ||    
T  16849879 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 16849978  T
Q  110 tgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    ||||||||||||| | |||||||| ||||||||| ||| ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  16849979 tgggaataaaaatagggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctac 16850062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 31738762 - 31738956
Alignment:
Q  9 gagaaattaattggcagttgaaagaacatggtggtag---------tggggtttacatatagcaaggcaaatgtcattcgtacgaataaaac-attccaa 98  Q
    ||||||||||||||||||||||| |||||||||||||         |||||||| ||  |||||||| ||  ||||||| || ||||||||  |||||||    
T  31738762 gagaaattaattggcagttgaaaaaacatggtggtaggagacatagtggggttttcacgtagcaagggaatagtcattcctaggaataaaaatattccaa 31738861  T
Q  99 ctcctcttacatgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||||| ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  31738862 ctcctctttcatgggaataaaaatggggagatcatgggttaaaaaatttcctgggtataatttgttcccaggtatatttttcttttaccttctac 31738956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 3e-59; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 11031561 - 11031744
Alignment:
Q  10 agaaattaattggcagttgaaagaacatggtggtagtggggtttacatatagcaaggcaaatgtcattcgtacgaataaaacattccaactcctcttaca 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||| || ||    
T  11031561 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 11031660  T
Q  110 tgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    ||||||||||||| | |||||||| ||||||||| ||| ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  11031661 tgggaataaaaatagggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctac 11031744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 18319860 - 18319677
Alignment:
Q  10 agaaattaattggcagttgaaagaacatggtggtagtggggtttacatatagcaaggcaaatgtcattcgtacgaataaaacattccaactcctcttaca 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||  || ||||||||||||||||||||| || ||    
T  18319860 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcatttctaggaataaaacattccaactcctttttca 18319761  T
Q  110 tgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    ||||||||||||| | |||||||| ||||||||||||| ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  18319760 tgggaataaaaatagggagatcatgggttaaaaaatttcctgggtataatttgttcccaggtatatttttcttttaccttctac 18319677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 46920362 - 46920179
Alignment:
Q  10 agaaattaattggcagttgaaagaacatggtggtagtggggtttacatatagcaaggcaaatgtcattcgtacgaataaaacattccaactcctcttaca 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||| || ||    
T  46920362 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 46920263  T
Q  110 tgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    ||||||||||||| | |||||||| ||||||||| ||| ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  46920262 tgggaataaaaatagggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctac 46920179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 52126214 - 52126405
Alignment:
Q  12 aaattaattggcagttgaaagaacatggtggtag---------tggggtttacatatagcaaggcaaatgtcattcgtacgaataaaa-cattccaactc 101  Q
    |||||||||||||||||||| |||||||||||||         |||||||| ||  ||||||||||   ||||||| || |||||||| |||||||||||    
T  52126214 aaattaattggcagttgaaaaaacatggtggtaggagacatagtggggttttcaagtagcaaggcactagtcattcctaggaataaaaacattccaactc 52126313  T
Q  102 ctcttacatgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttg-ttccatgtatatttttcttttaccttctac 191  Q
    ||||| |||||||||||||||||  ||||||| ||||||||| ||| ||| |||||||||| ||||| ||||||||||||| ||||||||||    
T  52126314 ctctttcatgggaataaaaatgggaagatcatgggttaaaaattttcctgggtataatttgtttccaggtatatttttcttgtaccttctac 52126405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 38007255 - 38007072
Alignment:
Q  10 agaaattaattggcagttgaaagaacatggtggtagtggggtttacatatagcaaggcaaatgtcattcgtacgaataaaacattccaactcctcttaca 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||| || ||    
T  38007255 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 38007156  T
Q  110 tgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    ||||||||||||| | |||||||| ||||||||| ||| ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  38007155 tgggaataaaaatagggagatcatgggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctac 38007072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 51083626 - 51083432
Alignment:
Q  9 gagaaattaattggcagttgaaagaacatggtggtag---------tggggtttacatatagcaaggcaaatgtcattcgtacgaataaaa-cattccaa 98  Q
    ||||||||||||||||||||||| |||||||||||||         |||||||| ||  |||||||||||  ||||||| || |||||||| ||||| ||    
T  51083626 gagaaattaattggcagttgaaaaaacatggtggtaggagacatagtggggttttcacgtagcaaggcaatagtcattcctaggaataaaaacattcaaa 51083527  T
Q  99 ctcctcttacatgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    |||||||| |||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  51083526 ctcctctttcatgggaataaaaatggagagatcatgggttaaaaattttcctgggtataatttgttcccaagtatatttttcttttaccttctac 51083432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 3428735 - 3428552
Alignment:
Q  10 agaaattaattggcagttgaaagaacatggtggtagtggggtttacatatagcaaggcaaatgtcattcgtacgaataaaacattccaactcctcttaca 109  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||| || ||    
T  3428735 agaaattaattggtagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 3428636  T
Q  110 tgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    ||||||||||||| | |||||||| ||||||||| ||| ||| |||||||||||| ||| ||||||||||||||||||||||||    
T  3428635 tgggaataaaaatagggagatcataggttaaaaattttcctgggtataatttgttcccaggtatatttttcttttaccttctac 3428552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 11465838 - 11465655
Alignment:
Q  10 agaaattaattggcagttgaaagaacatggtggtagtggggtttacatatagcaaggcaaatgtcattcgtacgaataaaacattccaactcctcttaca 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||| || ||    
T  11465838 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 11465739  T
Q  110 tgggaataaaaatggagagatcat-ggttaaaaaatttactgagtataatttgtt-ccatgtatatttttcttttaccttctac 191  Q
    ||||||||||||| | |||||||| ||||||||| |||  || |||||||||||| ||| ||||||||||||||||||||||||    
T  11465738 tgggaataaaaatagggagatcatgggttaaaaattttcatgggtataatttgttcccaggtatatttttcttttaccttctac 11465655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University