View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14353_low_93 (Length: 207)

Name: NF14353_low_93
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14353_low_93
NF14353_low_93
[»] chr4 (3 HSPs)
chr4 (14-192)||(4608389-4608561)
chr4 (25-136)||(5450638-5450744)
chr4 (20-93)||(10582992-10583065)
[»] chr2 (1 HSPs)
chr2 (20-79)||(20488697-20488756)
[»] chr5 (3 HSPs)
chr5 (24-93)||(18477025-18477094)
chr5 (22-76)||(10282458-10282512)
chr5 (20-70)||(18757747-18757797)
[»] chr7 (2 HSPs)
chr7 (33-96)||(8299554-8299617)
chr7 (20-182)||(11226166-11226326)
[»] scaffold1719 (1 HSPs)
scaffold1719 (25-80)||(1039-1094)
[»] scaffold0168 (1 HSPs)
scaffold0168 (30-77)||(24171-24218)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 6e-76; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 4608561 - 4608389
Alignment:
Q  14 aatataagtaatttgacacttatcaaccctccccaacttagaactttgtttttcctcaaacaaaagttataaaaaagatacatgattatgattaaatgca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||      ||||||    
T  4608561 aatataagtaatttgacacttatcaaccctccccaacttagaactttgtttttcctcaaacaaaagttatgaaaaagatacatgatta------aatgca 4608468  T
Q  114 agaaaatgattcacaagaattttaagtgaattaataagtttttgaaacaattttgaaatgcatgattcatagttgaatt 192  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4608467 agaaaatgattcacaaggattttaagtgaattaataagtttttgaaacaattttgaaatgcatgattcaaagttgaatt 4608389  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 5450744 - 5450638
Alignment:
Q  25 tttgacacttatcaaccctccccaacttagaactttgtttttcctcaaacaaaagttataaaaaagatacatgattatgattaaatgcaagaaaatgatt 124  Q
    |||| ||||||||||| |||||||||||| |||| ||||| |||||||||||| |   |||||||||||||    |  |||| ||||||||||||| | |    
T  5450744 tttggcacttatcaacgctccccaacttataactctgtttgtcctcaaacaaatg-cctaaaaaagataca----ttcgattgaatgcaagaaaataaat 5450650  T
Q  125 cacaagaatttt 136  Q
    ||||||||||||    
T  5450649 cacaagaatttt 5450638  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 10583065 - 10582992
Alignment:
Q  20 agtaatttgacacttatcaaccctccccaacttagaactttgtttttcctcaaacaaaagttataaaaaagata 93  Q
    ||||||||||||||||||||| |||||||||||| || ||||  |  ||||||||||||||  | |||||||||    
T  10583065 agtaatttgacacttatcaactctccccaacttaaaattttgggtgacctcaaacaaaagtcctcaaaaagata 10582992  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 20488697 - 20488756
Alignment:
Q  20 agtaatttgacacttatcaaccctccccaacttagaactttgtttttcctcaaacaaaag 79  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  20488697 agtaatttcacacttatcaactccccccaacttagaactttgtttttcctcaaacaaaag 20488756  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 18477025 - 18477094
Alignment:
Q  24 atttgacacttatcaaccctccccaacttagaactttgtttttcctcaaacaaaagttataaaaaagata 93  Q
    |||||||| |||||||| |||||||||||||| |||||||| | |||||||||||||  |||||||||||    
T  18477025 atttgacagttatcaactctccccaacttagagctttgtttgtactcaaacaaaagtcctaaaaaagata 18477094  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 10282512 - 10282458
Alignment:
Q  22 taatttgacacttatcaaccctccccaacttagaactttgtttttcctcaaacaa 76  Q
    ||||||| ||||||||||| || ||||||||||| |||||||| |||||||||||    
T  10282512 taatttggcacttatcaactcttcccaacttagagctttgtttgtcctcaaacaa 10282458  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 18757797 - 18757747
Alignment:
Q  20 agtaatttgacacttatcaaccctccccaacttagaactttgtttttcctc 70  Q
    ||||||||||||||||| ||  |||||||||||| |||||||||| |||||    
T  18757797 agtaatttgacacttattaattctccccaacttaaaactttgtttgtcctc 18757747  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 8299554 - 8299617
Alignment:
Q  33 ttatcaaccctccccaacttagaactttgtttttcctcaaacaaaagttataaaaaagatacat 96  Q
    |||| ||| |||||||||||||||||||||||||| ||||| ||||||  ||||||||||||||    
T  8299554 ttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagatacat 8299617  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 11226326 - 11226166
Alignment:
Q  20 agtaatttgacacttatcaaccctccccaacttagaactttgtttttcctcaaacaaaagttataaaaaagatacatgattatgattaaatgcaaga--- 116  Q
    ||||||||| ||||||||||| ||||||| |||  |||||||||| || ||||||||||||  ||||||||||||      | |||| ||||||| |       
T  11226326 agtaatttg-cacttatcaactctccccaccttttaactttgtttgtcgtcaaacaaaagtcctaaaaaagatac------acgattgaatgcaaaaaag 11226234  T
Q  117 aaatgattcacaagaattttaagtgaattaataagtt--tttgaaacaattttgaaatgcatgattca 182  Q
    |||||||||||||| ||||| ||||||| ||||||||  ||||||| || ||||| |||| |||||||    
T  11226233 aaatgattcacaaggatttttagtgaatcaataagtttctttgaaataaatttgagatgcgtgattca 11226166  T

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Target: scaffold1719 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold1719
Description:

Target: scaffold1719; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 1094 - 1039
Alignment:
Q  25 tttgacacttatcaaccctccccaacttagaactttgtttttcctcaaacaaaagt 80  Q
    |||||||||||||||| |||||||||||  ||||| ||||  ||||||||||||||    
T  1094 tttgacacttatcaactctccccaacttctaacttagtttcccctcaaacaaaagt 1039  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 24171 - 24218
Alignment:
Q  30 cacttatcaaccctccccaacttagaactttgtttttcctcaaacaaa 77  Q
    ||||||||||| |||||||||||| | |||||||| ||||||||||||    
T  24171 cacttatcaactctccccaacttaaatctttgtttgtcctcaaacaaa 24218  T

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