View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14353_low_94 (Length: 206)

Name: NF14353_low_94
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14353_low_94
NF14353_low_94
[»] chr3 (19 HSPs)
chr3 (23-190)||(28140413-28140579)
chr3 (49-190)||(27905462-27905603)
chr3 (117-190)||(28475303-28475376)
chr3 (117-173)||(28501099-28501155)
chr3 (71-190)||(17752404-17752521)
chr3 (71-190)||(19053724-19053841)
chr3 (117-182)||(8540835-8540900)
chr3 (137-190)||(28127024-28127077)
chr3 (137-190)||(28516405-28516458)
chr3 (49-124)||(27995393-27995470)
chr3 (49-94)||(28501052-28501097)
chr3 (137-190)||(28140957-28141008)
chr3 (49-109)||(28076361-28076422)
chr3 (117-176)||(28476050-28476109)
chr3 (146-182)||(8542915-8542951)
chr3 (144-190)||(28076301-28076347)
chr3 (117-154)||(8542572-8542609)
chr3 (70-98)||(28155924-28155952)
chr3 (70-98)||(28174969-28174997)
[»] chr4 (1 HSPs)
chr4 (49-109)||(9392813-9392874)
[»] chr7 (1 HSPs)
chr7 (75-103)||(8697411-8697439)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 28140579 - 28140413
Alignment:
Q  23 tataagtgttagagttttgttttagaggtttgtctaaaagataatagaaagcataaaactcaagttgatttataaacccttgtaataatcgtatgaaatc 122  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28140579 tataagtgttagagttttgttttagag-tttgtctaaaagataatagaaagcataaaactcaagttgatttataaacccttgtaataatcgtatgaaatc 28140481  T
Q  123 tagaacttggtcactgtaaacaattaattaaaatatggactgaaaattgttaaagcatgattgtttgt 190  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28140480 tagaacttggtcactgtaaacaattaattaaaatatcgactgaaaattgttaaagcatgattgtttgt 28140413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 49 - 190
Target Start/End: Complemental strand, 27905603 - 27905462
Alignment:
Q  49 ggtttgtctaaaagataatagaaagcataaaactcaagttgatttataaacccttgtaataatcgtatgaaatctagaacttggtcactgtaaacaatta 148  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||  |||||||||||||||||||||||||||||||    
T  27905603 ggtttgtctaaaagataatacaaagcataaaactcaagttgatttataaacccttgtaatactcttaaaaaatctagaacttggtcactgtaaacaatta 27905504  T
Q  149 attaaaatatggactgaaaattgttaaagcatgattgtttgt 190  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  27905503 attaaaatatggactgaaaattgttaaagtatgattgtttgt 27905462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 28475303 - 28475376
Alignment:
Q  117 gaaatctagaacttggtcactgtaaacaattaattaaaatatggactgaaaattgttaaagcatgattgtttgt 190  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  28475303 gaaatctagaacttggtcactgtaaacaattaattaaagtatcgactgaaaattgttaaagtatgattgtttgt 28475376  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 28501099 - 28501155
Alignment:
Q  117 gaaatctagaacttggtcactgtaaacaattaattaaaatatggactgaaaattgtt 173  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28501099 gaaatctacaacttggtcactgtaaacaattaattaaaatattgactgaaaattgtt 28501155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 17752404 - 17752521
Alignment:
Q  71 aagcataaaactcaagttgatttataaacccttgtaataatcgtatgaaatctagaacttggtcactgtaaacaattaattaaaatatggactgaaaatt 170  Q
    ||||||||||||||||||||||||||||||||||||||| ||  | |||| ||| ||||| ||| ||||||||| | |||||||||||  | || ||| |    
T  17752404 aagcataaaactcaagttgatttataaacccttgtaatactctaaagaaacctaaaactt-gtccctgtaaacagtaaattaaaatatccaatg-aaagt 17752501  T
Q  171 gttaaagcatgattgtttgt 190  Q
    ||||||| ||||||||||||    
T  17752502 gttaaagtatgattgtttgt 17752521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 19053724 - 19053841
Alignment:
Q  71 aagcataaaactcaagttgatttataaacccttgtaataatcgtatgaaatctagaacttggtcactgtaaacaattaattaaaatatggactgaaaatt 170  Q
    ||||||||||||||||||||||||||||||||||||||| ||  | |||| ||| ||||| ||| ||||||||| | |||||||||||  | || ||| |    
T  19053724 aagcataaaactcaagttgatttataaacccttgtaatactctaaagaaacctaaaactt-gtccctgtaaacagtaaattaaaatatccaatg-aaagt 19053821  T
Q  171 gttaaagcatgattgtttgt 190  Q
    ||||||| ||||||||||||    
T  19053822 gttaaagtatgattgtttgt 19053841  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 8540835 - 8540900
Alignment:
Q  117 gaaatctagaacttggtcactgtaaacaattaattaaaatatggactgaaaattgttaaagcatga 182  Q
    ||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  8540835 gaaatataaaacttggtccctgtaaacaattaattaaaatatcgactgaaaattgttaaagtatga 8540900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 28127077 - 28127024
Alignment:
Q  137 tgtaaacaattaattaaaatatggactgaaaattgttaaagcatgattgtttgt 190  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  28127077 tgtaaacaattaattaaaatattgactgaaaattgttaaagtatgattgtttgt 28127024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 28516405 - 28516458
Alignment:
Q  137 tgtaaacaattaattaaaatatggactgaaaattgttaaagcatgattgtttgt 190  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  28516405 tgtaaacaattaattaaaatatggactgaaaatcgttaaagtatgattgtttgt 28516458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 27995470 - 27995393
Alignment:
Q  49 ggtttgtctaaaagataataga--aagcataaaactcaagttgatttataaacccttgtaataatcgtatgaaatcta 124  Q
    ||||| |||||||||||||| |  |||||||||||||||||||||||| |||||||||||||| || || ||||||||    
T  27995470 ggtttctctaaaagataatatacaaagcataaaactcaagttgatttacaaacccttgtaatactcttaagaaatcta 27995393  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 28501052 - 28501097
Alignment:
Q  49 ggtttgtctaaaagataatagaaagcataaaactcaagttgattta 94  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  28501052 ggtttgtctaaaagataatacaaagcataaaactcaagttgattta 28501097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 28141008 - 28140957
Alignment:
Q  137 tgtaaacaattaattaaaatatggactgaaaattgttaaagcatgattgtttgt 190  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  28141008 tgtaaacaattaattaaaata--gactgaaaattgttaaagtatgattgtttgt 28140957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 28076422 - 28076361
Alignment:
Q  49 ggtttgtctaaaagataatagaaa-gcataaaactcaagttgatttataaacccttgtaata 109  Q
    ||||| ||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  28076422 ggtttttctaaaaaataatacaaaagcataaaagtcaagttgatttataaacccttgtaata 28076361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 28476050 - 28476109
Alignment:
Q  117 gaaatctagaacttggtcactgtaaacaattaattaaaatatggactgaaaattgttaaa 176  Q
    |||||||| ||||||||| || |||||||||||||||||||| ||||  |||||||||||    
T  28476050 gaaatctaaaacttggtccctctaaacaattaattaaaatatcgactagaaattgttaaa 28476109  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 8542915 - 8542951
Alignment:
Q  146 ttaattaaaatatggactgaaaattgttaaagcatga 182  Q
    |||||||||||||||||||||||||||||||| ||||    
T  8542915 ttaattaaaatatggactgaaaattgttaaagtatga 8542951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 28076347 - 28076301
Alignment:
Q  144 aattaattaaaatatggactgaaaattgttaaagcatgattgtttgt 190  Q
    ||||||| ||||||| |||||||| ||||||||| ||||||||||||    
T  28076347 aattaataaaaatatcgactgaaatttgttaaagtatgattgtttgt 28076301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 8542572 - 8542609
Alignment:
Q  117 gaaatctagaacttggtcactgtaaacaattaattaaa 154  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  8542572 gaaatctaaaacttggtccctgtaaacaattaattaaa 8542609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 28155952 - 28155924
Alignment:
Q  70 aaagcataaaactcaagttgatttataaa 98  Q
    |||||||||||||||||||||||||||||    
T  28155952 aaagcataaaactcaagttgatttataaa 28155924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 28174997 - 28174969
Alignment:
Q  70 aaagcataaaactcaagttgatttataaa 98  Q
    |||||||||||||||||||||||||||||    
T  28174997 aaagcataaaactcaagttgatttataaa 28174969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 9392813 - 9392874
Alignment:
Q  49 ggtttgtctaaaagataatagaaa-gcataaaactcaagttgatttataaacccttgtaata 109  Q
    ||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  9392813 ggtttctctaaaaaataatacaaaagcataaaactcaagttgatttataaacccttgcaata 9392874  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 8697411 - 8697439
Alignment:
Q  75 ataaaactcaagttgatttataaaccctt 103  Q
    |||||||||||||||||||||||||||||    
T  8697411 ataaaactcaagttgatttataaaccctt 8697439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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