View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14354_low_1 (Length: 405)
Name: NF14354_low_1
Description: NF14354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14354_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 43532040 - 43531676
Alignment:
| Q |
19 |
ggatctacttttgatagctgcttttgtcatagctttatcttgcagcgcattgatagcaattgtgttgagatggagaaggttgaagaaagggattcctaag |
118 |
Q |
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| T |
43532040 |
ggatctacttttgatagctgcttttgtcatagctttatcttgcagcgcattgatagcaattgtattgagatggagaaggttgaagaaagggattcctaag |
43531941 |
T |
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| Q |
119 |
aaaggcgttacacagacatcgcagatggaaattaaaccctttgatccaagttcagctgaaactaagaatacccttgaagaacatgaagttcattttggag |
218 |
Q |
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| T |
43531940 |
aaaggccttacacaaacatcgcagatggaaattaaaccctttgatccaagttcagctgaacctaagaatgcccttgaagaacatgaagttcattttggag |
43531841 |
T |
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| Q |
219 |
gcaggcctaactttaaaggtaattccattgtctctttccttgcatttctaaaaatatatattgactgaaaaattgacaaactagtgcattttttgagttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43531840 |
gcaggcctaactttaaaggtaattccattgtctctttccttgcatttctaaaaatatatattgactgaaaaattgacaaactagtgcattttttgagttg |
43531741 |
T |
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| Q |
319 |
aacagatatattaggcaaattcaagaatgaaacgtgtggatctgatattggagttttggtctgtg |
383 |
Q |
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| T |
43531740 |
aacagatatattaggcaaattcaagaatgaaacgtgtggatctgatattggagttttggtttgtg |
43531676 |
T |
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