View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14354_low_2 (Length: 292)

Name: NF14354_low_2
Description: NF14354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14354_low_2
NF14354_low_2
[»] chr5 (7 HSPs)
chr5 (23-244)||(12037909-12038130)
chr5 (25-275)||(11859113-11859378)
chr5 (23-126)||(11826943-11827046)
chr5 (38-146)||(11730816-11730924)
chr5 (38-146)||(11903281-11903389)
chr5 (38-146)||(11730372-11730480)
chr5 (209-285)||(11827171-11827250)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 12037909 - 12038130
Alignment:
Q  23 tgctgctgttcctgttgttattgttattgttggtgttcctggaattggaaaaactaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12037909 tgctgctgttcctgttgttattgttattgttggtgttcctggaattggcaaaacaaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaat 12038008  T
Q  123 tttgggttacaaccaatttggatcaaaacctttgatgttgaatctatagcaaaaagtgtttccgagtctcctcatgagaaacgcctcttacttgttatag 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  12038009 tttgggttacaaccaatttggatcaaaacctttgatgttgaatctatagcaaaaagtgttgccgagtctcatcatgagaaacgcctcttacttgttatag 12038108  T
Q  223 atgatttgagaattgagattaa 244  Q
    ||||||||||| ||||||||||    
T  12038109 atgatttgagatttgagattaa 12038130  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 11859113 - 11859378
Alignment:
Q  25 ctgctgttcctgttgttattgttattgttggtgttcctggaattggaaaaactaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattt 124  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||| ||  || ||     
T  11859113 ctgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttc 11859212  T
Q  125 tgggttacaaccaatttggatcaa----------aacc--tttgatgttgaatctatagcaaaaagtgtttccga---gtctcctcatgagaaacgcctc 209  Q
    ||| || ||| |||||||||||||           |||  |||||||||||||| |||| |||||| ||| | ||   || |  |||| |||||||| ||    
T  11859213 tggtttccaagcaatttggatcaatggtcttcatcaccaatttgatgttgaatccatagtaaaaagcgttactgatcggtatgttcataagaaacgcgtc 11859312  T
Q  210 ttacttgttatagatgatttgagaattgagattaagaatgatgatatcaagaagttgcagaagaaa 275  Q
    ||||||||||||||||||||| ||||||||||| |||||| |||| || |||||||||||||||||    
T  11859313 ttacttgttatagatgatttgcgaattgagattgagaatggtgatctcgagaagttgcagaagaaa 11859378  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 11826943 - 11827046
Alignment:
Q  23 tgctgctgttcctgttgttattgttattgttggtgttcctggaattggaaaaactaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaat 122  Q
    |||||||||||||||| |||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||| ||  ||||    
T  11826943 tgctgctgttcctgtttttattgctattgttggtgttactggaattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaagcgaat 11827042  T
Q  123 tttg 126  Q
    ||||    
T  11827043 tttg 11827046  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 11730816 - 11730924
Alignment:
Q  38 tgttattgttattgttggtgttcctggaattggaaaaactaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaacca 137  Q
    |||| |||| |||||||||||||| ||||| || || || |||||||| |  || ||||| ||||||||||||||| ||   ||||||||| ||||||||    
T  11730816 tgtttttgtcattgttggtgttccgggaatagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaagcaaattttgggctacaacca 11730915  T
Q  138 atttggatc 146  Q
    |||||||||    
T  11730916 atttggatc 11730924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 11903389 - 11903281
Alignment:
Q  38 tgttattgttattgttggtgttcctggaattggaaaaactaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaacca 137  Q
    ||||||||| ||||||||||||||||||||||| ||||| ||||||||   ||| ||||| || ||||| |||||| ||    ||||||| ||  |||||    
T  11903389 tgttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaacca 11903290  T
Q  138 atttggatc 146  Q
    |||||||||    
T  11903289 atttggatc 11903281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 11730372 - 11730480
Alignment:
Q  38 tgttattgttattgttggtgttcctggaattggaaaaactaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaacca 137  Q
    |||| |||| |||||||||||| | ||||| ||||| || |||||||| | ||| |||||  |||||||||||||| ||   |||||||||  ||| |||    
T  11730372 tgtttttgtcattgttggtgtttcaggaataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaagcaaattttgggccacagcca 11730471  T
Q  138 atttggatc 146  Q
    |||||||||    
T  11730472 atttggatc 11730480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 11827171 - 11827250
Alignment:
Q  209 cttacttgttatagatgatttgagaattgagat---taagaatgatgatatcaagaagttgcagaagaaactaatggagg 285  Q
    ||||||| ||||||||||||||||||||| |||   |||| |||||||  || ||||||| ||||||||| | |||||||    
T  11827171 cttacttattatagatgatttgagaattgcgattaataagcatgatgacctcgagaagttacagaagaaattgatggagg 11827250  T

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