View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14354_low_3 (Length: 247)
Name: NF14354_low_3
Description: NF14354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14354_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 65 - 232
Target Start/End: Complemental strand, 12037851 - 12037687
Alignment:
| Q |
65 |
ccaacagctacatgctcagtacttttctcaaaatcttcacatgcagactttcttttctcagtagtattactaataactgctgctgcttcttcttctccta |
164 |
Q |
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| T |
12037851 |
ccaacagctacatgcttggtatttttctcaaagtcttcacatgcagactttcttttctcagtagtattactaataactgctgct---tcttcttctccta |
12037755 |
T |
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| Q |
165 |
gcttcatctcttgctcgatcaggcgtttgagttcctcggtgattttcttaacatgacgagtgcctttg |
232 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
12037754 |
gcttcgtctcttgctcgatcaggcgtttgagtttctcggtggttttcttaacatgacgagtgcctttg |
12037687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 11859054 - 11858975
Alignment:
| Q |
64 |
gccaacagctacatgctcagtacttttctcaaaatcttcacatgcagactttcttttctcagtagtattactaataactg |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||| |
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| T |
11859054 |
gccaacagctacatgctcagtacttttctcaaaatctttgtatgccaactttcttttctcattagtattactaataactg |
11858975 |
T |
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