View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14354_low_5 (Length: 243)
Name: NF14354_low_5
Description: NF14354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14354_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 45894349 - 45894511
Alignment:
| Q |
1 |
ataacagcatgtttttgtttaagcgaataaggaaaatattggttaaaaatatgnnnnnnnnnnnnaggaatggttgaaaatatgttaattagttgcaaat |
100 |
Q |
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| T |
45894349 |
ataacagcatgtttttgtttaagcgaataaggaaaatattggttaaaaatatgtttttgttttttaggaatggttgaaaatatgttaattagttgcaaat |
45894448 |
T |
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| Q |
101 |
accttaaccagatttgannnnnnnnnatttgagaagaaaaccccatgttaatttatttgacaga |
164 |
Q |
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| T |
45894449 |
accttaaccagatttga-ttttttttatttgaaaagaaaaccccatgttaatttatttgacaga |
45894511 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 45895427 - 45895476
Alignment:
| Q |
187 |
taaaaaagtatatgtaatttatac----ctatatataattggatacatga |
232 |
Q |
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| T |
45895427 |
taaaaaagtatatgtaatttatacctatctatatataattggatacatga |
45895476 |
T |
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