View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14355_high_3 (Length: 482)
Name: NF14355_high_3
Description: NF14355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14355_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 45398218 - 45398643
Alignment:
| Q |
1 |
ttaggttgggttgtataacaaaaaagcttgaatatctccattaattctaatgttaggattaggtgggcacaattaaattgtacatatttgtattgagcat |
100 |
Q |
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| T |
45398218 |
ttaggttgggctgtataacaaaaaagcttgaatatctccattaattctaatgttaggattaggtgggcacaattaaattgtacatatttgtattgagcat |
45398317 |
T |
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| Q |
101 |
ttctaattcacaatttcaaatcagcatatataactaaataactattaaaatcaagtagtacacggcaacatcacatagagcttcttaatcattatgcaac |
200 |
Q |
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| T |
45398318 |
ttctaattcacaatttaaaatcagcatatataactaaataactattaaaatcaagtagtacacggcaacagcacatagagcttcttaatcattatgcaac |
45398417 |
T |
|
| Q |
201 |
atcttaatcataacaatcatatgaacttctttcgcacatagtcattagtcaaggnnnnnnngagagaaataatttcaatctcgttcgatcatgcatcatt |
300 |
Q |
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| T |
45398418 |
atcttaatcataacaatcatatgaacttctttcgcacatagtcaatagtcaaggaaaaaaa-agaggaataatttcaatctcattcgatcatgcatcatt |
45398516 |
T |
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| Q |
301 |
tctaattgacttgtgtatactcaagttgactataggttatttcatgtctcatatatatctaaccaatcaaacctcatagttgggagtcatttgtagtgca |
400 |
Q |
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| T |
45398517 |
tctaattgacttgtgtatactcaagttgactataggttatttcatgtctcatatatatctaaccaatcaaaccacatagttgggagtcatttgtagtgta |
45398616 |
T |
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| Q |
401 |
aagaagatgtagaggttggaaaagtca |
427 |
Q |
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| T |
45398617 |
aagaagatgtagaggttggaaaagtca |
45398643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 464
Target Start/End: Original strand, 45398661 - 45398695
Alignment:
| Q |
430 |
aaaatatatttccaagagccctcacacttaccagg |
464 |
Q |
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| T |
45398661 |
aaaatatatttccaagagccctcacacttaccagg |
45398695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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