View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14355_high_4 (Length: 458)
Name: NF14355_high_4
Description: NF14355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14355_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 34356079 - 34356521
Alignment:
| Q |
1 |
ataatatgtgaaagtgacaacgtccaagtaaagggctttgagcgatggaagattaacgcatggaacttcatttaaggttatctgtttcaatttaaggatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34356079 |
ataatatgtgaaagtgacaacgtccaagtaaagggctttgagcgatggaagattaacgaatggaacttcatttaaggttatctgtttcaatttaaggatt |
34356178 |
T |
|
| Q |
101 |
gacaatgttttgctactaaaaacgaaagatggcagcgtcatctgggagaaaagtgagtgagagaagtcaatgttgaggttctcaactcctctttgaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34356179 |
gacaatgttttgctactaaaaacgaaagatggcagcgtcatctgggagaaaagtgagtgagagaagtcaatgttgaggttctcaactcctctttgaattg |
34356278 |
T |
|
| Q |
201 |
ctatataaagaaaattatagatatccctgcaatcgtagtcgttccaacattgaagatggaatgagaggatgggtagagtgatatctcgcatggccatgag |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34356279 |
ctatataaagaaaattgtagatatccctgcaatcgtagtcgttccaacattgaagatggaaagagaggatgggtagagtgatatctcgcatggccatgag |
34356378 |
T |
|
| Q |
301 |
tgagtatacaaaattgcaaaatgtcagtgagtctggaaatggttcgtcatccaagttgaggaagagttgtgagagccaaagtggtctccacctctttgag |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34356379 |
tgagtatacaaaattgcaaaatgtcggtgagtctggaaatggttcgtcatccaagttgaggaagagttgtgagagccaaagtggtctccacctctttgag |
34356478 |
T |
|
| Q |
401 |
aggatacttgtggtggcggcatctttaatcgaaacaaaggaaa |
443 |
Q |
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| T |
34356479 |
aggatacttgtggtggctgcatctttaatcgaaacaaaggaaa |
34356521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 35047678 - 35047218
Alignment:
| Q |
1 |
ataatatgtgaaagtgacaacgtccaagtaaagggctttgagcgatggaagattaacgcatggaacttcatttaaggttatctgtttcaatttaaggatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35047678 |
ataatatgtgaaagtgacaacgtccaagtaaagggctttgagagatggaagattaacgcatgtaacttcatttaaggttatctgtttcaatttaaggatt |
35047579 |
T |
|
| Q |
101 |
gacaatgttttgctactaaaaacgaaagatggcagcgtcatctgggagaaaagtgagtgagag------aagtcaatgttgaggttctcaactcctcttt |
194 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35047578 |
gacaatgttttgctactaaaaacaaaagatggcagcgccatccgggagaaaagtgagtgagagctagagaagtcaatgttgaggttctcaactcctcttt |
35047479 |
T |
|
| Q |
195 |
gaattgctatataaagaaaattatagatatcc------------ctgcaatcgtagtcgttccaacattgaagatggaatgagaggatgggtagagtgat |
282 |
Q |
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| T |
35047478 |
gaattgctatattaacaaatttgtagatatcctcggagatatccctgcaatcgtagtagttccaacattcaagatggaaagagaggatgggtagagtgat |
35047379 |
T |
|
| Q |
283 |
atctcgcatggccatgagtgagtatacaaaattgcaaaatgtcagtgagtctggaaatggttcgtcatccaagttgaggaagagttgtgagagccaaagt |
382 |
Q |
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||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047378 |
atctcgcatggccatgagtgaatatccaaaattgcaaaaggtcagtgagtctggaaatggttcgtcatccaagttgaggaagagttgtgagagccaaagt |
35047279 |
T |
|
| Q |
383 |
ggtctccacctctttgagaggatacttgtggtggcggcatctttaatcgaaacaaaggaaa |
443 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35047278 |
ggtctcgacctctttgagaggatacttgtggtggcggcatctttaatcgaaataaaggaaa |
35047218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 49760640 - 49760753
Alignment:
| Q |
1 |
ataatatgtgaaagtgacaacgtccaagtaaagggctttgagcgatggaagattaacgcatggaacttcatttaaggttatctgtttcaatttaaggatt |
100 |
Q |
| |
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|||||||||| ||||||||| ||||||| ||||||||||||||| ||||||| |||| | |||||| || | || |||||| |||||||| |||| | |
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| T |
49760640 |
ataatatgtgtaagtgacaagttccaagtgaagggctttgagcgaaggaagatcaacgtacggaactccagtcaatgttatcctcttcaatttgaggact |
49760739 |
T |
|
| Q |
101 |
gacaatgttttgct |
114 |
Q |
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| T |
49760740 |
aacaatgttttgct |
49760753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 354
Target Start/End: Original strand, 49760875 - 49760972
Alignment:
| Q |
257 |
tggaatgagaggatgggtagagtgatatctcgcatggccatgagtgagtatacaaaattgcaaaatgtcagtgagtctggaaatggttcgtcatccaa |
354 |
Q |
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|||||||||| ||||| || ||||||||| |||||||| | | |||||| |||||||||||||| || | ||||| |||||||||||||||||| |
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| T |
49760875 |
tggaatgagaagatggataaggtgatatcttgcatggccgtcattgagtaaacaaaattgcaaaaggttataaagtctaaaaatggttcgtcatccaa |
49760972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 413
Target Start/End: Original strand, 49974083 - 49974160
Alignment:
| Q |
336 |
gaaatggttcgtcatccaagttgaggaagagttgtgagagccaaagtggtctccacctctttgagaggatacttgtgg |
413 |
Q |
| |
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|||| |||| |||||| ||| ||||| ||||||||||||||| |||||| ||||| |||| ||||| || ||||||| |
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| T |
49974083 |
gaaagggttggtcatcgaagcggaggatgagttgtgagagccagagtggtttccacttcttcgagagaatgcttgtgg |
49974160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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