View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14355_high_7 (Length: 338)
Name: NF14355_high_7
Description: NF14355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14355_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 24309207 - 24308883
Alignment:
| Q |
8 |
tttacctatatgcattcatcaactaaaaaatttcaaacaaacaaatattaccattagcataaaaataaacttgttcatacatcccaaaccttgtttgttt |
107 |
Q |
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| T |
24309207 |
tttatctatatgcattcatcaactaaaaaatttcaaacaa-caaatattaccattagcataaaaataaatttgttcatacatcccaaaccttgtttgttt |
24309109 |
T |
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| Q |
108 |
aaatttaaatttatgtgaccataattcaaagaaaattaacacatcagatcattgaagttatttaagatagcaaaaatttattcaaaatgagagtcagaat |
207 |
Q |
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| T |
24309108 |
aaatttaaattta-----ccataattcaaagaaaattaacacataagatcattgaagttattcaagataacaaaaatttattcaaaatgagagtcagaat |
24309014 |
T |
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| Q |
208 |
gagcaacaaactcaaattgaaggaatcaaatacttcaggcttataaagtttcacttagtatatagtgagttttcagttaaatcattccgtcctttactat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24309013 |
gagcaacaaactcaaattgaaggaatcaaatacttcaggcttataaagtttcacttagtatatagtgagttttcagttaaatcattccgtcctttactat |
24308914 |
T |
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| Q |
308 |
aatcctcaatcagaactcatgtcctcatatt |
338 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
24308913 |
aatcctcaatcagaactcatgtcctcatatt |
24308883 |
T |
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