View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14355_low_10 (Length: 301)
Name: NF14355_low_10
Description: NF14355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14355_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 41825535 - 41825278
Alignment:
| Q |
18 |
accttctcataaaattttagctatgaaccccctaaattaatttctttgcaccgaatgatgaacccactcacatttgctattagtttaatggttctatgac |
117 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41825535 |
accttctcataaaattttagctatgaaccctctgaattaatttctttgcaccgaatgatgaacccactcacatttgctattagttcaatggttctatgac |
41825436 |
T |
|
| Q |
118 |
attcttactctaatccattagcattcttaaaagctatgcagttcaatttcatttgcaattgacaatgaattgtagtgtcgtattgttatagatatattat |
217 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| |
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| T |
41825435 |
attcttactctaacccattagcattcttaaaagttatgcagttcaatttcatttgcagctgacaatgaattgtagtgtcgcattgttattgatatattat |
41825336 |
T |
|
| Q |
218 |
attccannnnnnnaatggtgtatcaaattaaataatggtaacattgataatttactcc |
275 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41825335 |
attccatttttttaatggtgtatcaaattaaataatggtaacattgataatttactcc |
41825278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 29611543 - 29611799
Alignment:
| Q |
18 |
accttctcataaaattttagctatgaaccccctaaattaatttctttgcaccgaatgatgaacccactcacatttgctattagtttaatggttctatgac |
117 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
29611543 |
accttctcataaaattttagctatgaacccc-tgaattaatttctttgcaccgaatgatgaacccactcacatttgctattagttcaatggttccctgac |
29611641 |
T |
|
| Q |
118 |
attcttactctaatccattagcattcttaaaagctatgcagttcaatttcatttgcaattgacaatgaattgtagtgtcgtattgttatagatatattat |
217 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
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| T |
29611642 |
attcttactctaacccattagcatttttaaaagctatgcacttcaatttcatttgcaattgccaatgaattgtagtgtcacattgttattgatatattat |
29611741 |
T |
|
| Q |
218 |
attccannnnnnnaatggtgtatcaaattaaataatggtaacattgataatttactcc |
275 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29611742 |
attccatttttttaatggtgtatcaaattaaataatggtaacattgataatttactcc |
29611799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 31808366 - 31808110
Alignment:
| Q |
18 |
accttctcataaaattttagctatgaaccccctaaattaatttctttgcaccgaatgatgaacccactcacatttgctattagtttaatggttctatgac |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |
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| T |
31808366 |
accttctaataaaattttagctatgaaccctctgaattaatttctttgcaccgaatgatgaacccactcacatttactattagttcaatggttccatgac |
31808267 |
T |
|
| Q |
118 |
attcttactctaatccattagcattcttaaaagctatgcagttcaatttcatttgcaattgacaatgaattgtagtgtcgtattgttatagatatattat |
217 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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| T |
31808266 |
attcttactctaacctattagcattcttaaaagctatgcaattcaatttcatttgcaattgccaatgaattgtagtgtcgcattgttattgatatattat |
31808167 |
T |
|
| Q |
218 |
attccannnnnnnaatggtgtatcaaattaaataatggtaacattgataatttactcc |
275 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31808166 |
attcca-ttttttaatggtgtatcaaattaaataatggtaacattgataatttactcc |
31808110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 50537335 - 50537182
Alignment:
| Q |
18 |
accttctcataaaattttagctatgaaccccctaaattaatttctttgcaccgaatgatgaacccactcacatttgctattagtt---taatggttctat |
114 |
Q |
| |
|
||||| ||||||||||| | ||||||||| ||| || ||| || ||||||||||||||| ||| |||| ||| ||||||||| || | |||||||| | |
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| T |
50537335 |
accttttcataaaatttaaactatgaacctcctgaactaacttgtttgcaccgaatgattaactcacttacaattgctattaattcaatcatggttctgt |
50537236 |
T |
|
| Q |
115 |
gacattcttactctaatccattagcattcttaaaagctatgcagttcaatttca |
168 |
Q |
| |
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| |||||||||||||| ||||| ||| ||||||||| ||||||||||||||| |
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| T |
50537235 |
ggcattcttactctaacccattgaaatttttaaaagctgtgcagttcaatttca |
50537182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 15827250 - 15827400
Alignment:
| Q |
18 |
accttctcataaaattttagctatgaaccccctaaattaatttctttgcaccgaatgatgaacccactcacatttgctattagtttaatggttctatgac |
117 |
Q |
| |
|
|||||||| |||||| ||| ||||||||| ||| || |||||||||||||||||||||||||| || |||| ||| ||| ||||| ||||||| || | |
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| T |
15827250 |
accttctcgtaaaatcttaactatgaacctcctcaactaatttctttgcaccgaatgatgaactcagtcaccttttctactagttcaatggtttcgtggc |
15827349 |
T |
|
| Q |
118 |
attcttactctaatccattagcattcttaaaagctatgcagttcaatttca |
168 |
Q |
| |
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||||||||||| | ||||| |||||||||||||| ||||||||||||||| |
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|
| T |
15827350 |
attcttactcttacccattgacattcttaaaagctgtgcagttcaatttca |
15827400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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