View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14355_low_11 (Length: 255)
Name: NF14355_low_11
Description: NF14355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14355_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 46788133 - 46788286
Alignment:
| Q |
1 |
taaattgtaaagttttaataaaaaatatgagccaatgtgtaaattttaaaacatataagaaccaatctgcataatttgaaataatcaaaatgatcaattt |
100 |
Q |
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| T |
46788133 |
taaattgtaaagttttaataaaaaatatgagtcaatgtgtaaattttaaaacatataagaaccaatctgcataatttgaaataatcaaaatgatcaattt |
46788232 |
T |
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| Q |
101 |
gagattcacattacatagaattagaaagaaattccaaattcttagttgatattt |
154 |
Q |
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| T |
46788233 |
gagattcaacttacatagaattagaaagaaattccaaattcttagttgatattt |
46788286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 46788319 - 46788389
Alignment:
| Q |
185 |
tggaggtagtaatagtaaagtttgcgtattggttatactaatactagtctatgaaataatttggatcctga |
255 |
Q |
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| T |
46788319 |
tggaggtagtaatagtaaagtttgcgtattggttatactaatactagtctatgaaataatttggatcctga |
46788389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 46780901 - 46780933
Alignment:
| Q |
185 |
tggaggtagtaatagtaaagtttgcgtattggt |
217 |
Q |
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| T |
46780901 |
tggaggtagtaatagtaaagtttgcttattggt |
46780933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 6865843 - 6865896
Alignment:
| Q |
32 |
ccaatgtgtaaattttaaaacatataagaaccaatctgcataatttgaaataat |
85 |
Q |
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| T |
6865843 |
ccaatgtgtattttttagaacatataagaatcaatttgcataatttgaaataat |
6865896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 36028866 - 36028927
Alignment:
| Q |
20 |
aaaaaatatgagccaatgtgtaaat-tttaaaacatataagaaccaatctgcataatttgaa |
80 |
Q |
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| T |
36028866 |
aaaaaataggggctaatgtgtaattgtttgaaacatataagaaccaatttgcataatttgaa |
36028927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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