View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14355_low_15 (Length: 211)
Name: NF14355_low_15
Description: NF14355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14355_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 51847364 - 51847541
Alignment:
| Q |
17 |
tactcaatttgatatgcaatattgtttttaaatgctgaatcgataccaatatgaaattactgcgaaacacggtataatttatgtgaaaaaacaagatttt |
116 |
Q |
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| T |
51847364 |
tactcaatttgatatgcaatattgtttttaaatgctgaatcgataccaatatgaaattattgtgaaacacagtataatttatgtgaaaaaacaagatttt |
51847463 |
T |
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| Q |
117 |
aaaggtgtttgtttgcaagaatcttaaaaaacaattatttgcagttaacttgtggattttcaaaataagtgtgtgcat |
194 |
Q |
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| T |
51847464 |
aaaggtgtttgtttgcaagaatcttaaaaaacaattatttgcagttaacttgtggattttcaaaataagtgtgtgcat |
51847541 |
T |
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Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 26888907 - 26888730
Alignment:
| Q |
17 |
tactcaatttgatatgcaatattgtttttaaatgctgaatcgataccaatatgaaattactgcgaaacacggtataatttatgtgaaaaaacaagatttt |
116 |
Q |
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|||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| |
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| T |
26888907 |
tactcaatttgatatggaatgttgttttgaaatgctaaatcgataccaatatgaaattactgcggaacacggtataatttctgtgaaaaatcaagatttt |
26888808 |
T |
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| Q |
117 |
aaaggtgtttgtttgcaagaatcttaaaaaacaattatttgcagttaacttgtggattttcaaaataagtgtgtgcat |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
26888807 |
aaaggtgtttgtttgcaagaatcttaaaaaacaattatctgcggttaacttgtggattttcaaaataagtgtgtgcat |
26888730 |
T |
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