View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14355_low_3 (Length: 537)
Name: NF14355_low_3
Description: NF14355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14355_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 13 - 522
Target Start/End: Original strand, 5538209 - 5538718
Alignment:
| Q |
13 |
aaaatattgagtgatggtgatgaaaattttcaaatgcaccctctataaacaaaatatatgtatagatgtaaatcaaatagtgattgtaaggtttttgctt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5538209 |
aaaatattgagtgatggtgatgaaaattttcaaatgcaccctctataaacaaaatatatgtatagatgtaaatcaaatggtgattgtaaggtttttgctt |
5538308 |
T |
|
| Q |
113 |
tatgccattggagtcattttccgtccgnnnnnnnggcttcaatcttgattcaccttcaagaactatgacatgctttcgaacaatttggttctcatgtcca |
212 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5538309 |
tatgccattggaatcattttccgtccgtttttttggcttcaatcttgattcacctccaagaactatgacatgctttcgaacaatttggttctcatgtcca |
5538408 |
T |
|
| Q |
213 |
tctagtaacatatagtgatgctctaattgaataagggaaaccatttaatccaccttcttgtgattcaactcttcatctcatcattgtcttttggaataat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5538409 |
tctagtaacatatagtgatgctctaattgaataagggaaaccatttaatccaccttcttgtgattcaactctttatctcatcattgtcttttggaataat |
5538508 |
T |
|
| Q |
313 |
taacccttcacttgcttgcgctgcatttgttttcaactctttcaaatgtgtaataacttcagctagtaaggatgttttgtccaactaagcatgttttgta |
412 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5538509 |
taacccttcacttgcttgcgctgcatttgttttcaactctttcaaatgtgtaataacttcagctagtaaggatgttttgtccaactaaggatgttttgta |
5538608 |
T |
|
| Q |
413 |
caaatctaataagtacaaatctaataacttcagctagtaaggatattttgtccaactaagttaaaaaggtacacaaaaatgttagattctgaaagattaa |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5538609 |
caaatctaataagtacaaatctaataacttcagctagtaaggatattttgtccaactaagttaaaaaggtacacaaaaatgttagattctgaaagattaa |
5538708 |
T |
|
| Q |
513 |
catatatacc |
522 |
Q |
| |
|
|||||||||| |
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|
| T |
5538709 |
catatatacc |
5538718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 40302130 - 40302308
Alignment:
| Q |
31 |
gatgaaaattttcaaatgcaccctctataaacaaaatatatgtatagatgtaaatcaaatagtgattgtaaggtttttgctttatgccattggagtcatt |
130 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |
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| T |
40302130 |
gatgaaaaatttcaaatgcaccctctataa-caaaatatatgtatagatgtaaatcatacagtgattataaggtttttgctttatgccattggagtcatt |
40302228 |
T |
|
| Q |
131 |
ttccgtccgnnnnnnnggcttcaatcttgattcaccttcaagaactatgacatgctttcgaacaatttggttctcatgtc |
210 |
Q |
| |
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||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
40302229 |
ttccgtccgcttttttggcttcaaccttgattcacctccaagaactaccacatgctttcgaacagtttggttctcatgtc |
40302308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 25574223 - 25574428
Alignment:
| Q |
21 |
gagtgatggtgatgaaaattttcaaatgcaccctctataaacaaaatatatgtatagatgtaaatcaaatagtgattgtaaggtttttgctttatgccat |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25574223 |
gagtaatggtgatgaaaattttcaaatgcaccctctataa-caaaatatatgtatagatgtaaatcaaatagtgattgtaaggtttttgctttatgccat |
25574321 |
T |
|
| Q |
121 |
tggagtcattttccgtccgnnnnnnnggcttcaatcttgattcaccttcaagaactatgacatgctttcgaacaatttggttctcatgtccatctagtaa |
220 |
Q |
| |
|
|||| ||||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
25574322 |
tggaatcattttccatccacttttttggcttcaaccttgattcaccttcaagaactatcacatgctttcgaacagtttggttctcatgtccacctagtaa |
25574421 |
T |
|
| Q |
221 |
catatag |
227 |
Q |
| |
|
||||||| |
|
|
| T |
25574422 |
catatag |
25574428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 228 - 400
Target Start/End: Original strand, 39331717 - 39331888
Alignment:
| Q |
228 |
tgatgctctaattgaataagggaaaccatttaatccaccttcttgtgattcaactcttcatctcatcattgtcttttggaataattaacccttcacttgc |
327 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
39331717 |
tgatgctctaattgaataaggcaaaccatttaatccaccttcttgtgattcaactctt-atctcatcactgtcttttggaataactaacccttcacttgc |
39331815 |
T |
|
| Q |
328 |
ttgcgctgcatttgttttcaactctttcaaatgtgtaataacttcagctagtaaggatgttttgtccaactaa |
400 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
39331816 |
ttgtgctgcatttgttttcagctctttcaaatgtgtaataacttcagctagtaaggatgctttgtccaactaa |
39331888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 276 - 397
Target Start/End: Original strand, 25574663 - 25574783
Alignment:
| Q |
276 |
ttcaactcttcatctcatcattgtcttttggaataattaacccttcacttgcttgcgctgcatttgttttcaactctttcaaatgtgtaataacttcagc |
375 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| | |
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| T |
25574663 |
ttcaactctt-atctcatcactgtcttttggaataattaacccttcacttgcttgtgttgcatttgttttcagctctttcaaatgtgtaataacttcaac |
25574761 |
T |
|
| Q |
376 |
tagtaaggatgttttgtccaac |
397 |
Q |
| |
|
| ||||||||||||||||||| |
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|
| T |
25574762 |
aaataaggatgttttgtccaac |
25574783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 224 - 337
Target Start/End: Original strand, 32726487 - 32726594
Alignment:
| Q |
224 |
atagtgatgctctaattgaataagggaaaccatttaatccaccttcttgtgattcaactcttcatctcatcattgtcttttggaataattaacccttcac |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
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|
| T |
32726487 |
atagtgatgctctaattgaataagggaaaccatttaatccaccttcttgtgattcaactctt-atctcatcgctgtct-----aataattaacccttcac |
32726580 |
T |
|
| Q |
324 |
ttgcttgcgctgca |
337 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
32726581 |
ttgcttgtgctgca |
32726594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 434 - 520
Target Start/End: Original strand, 25574749 - 25574835
Alignment:
| Q |
434 |
taataacttcagctagtaaggatattttgtccaactaagttaaaaaggtacacaaaaatgttagattctgaaagattaacatatata |
520 |
Q |
| |
|
||||||||||| | | ||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
25574749 |
taataacttcaacaaataaggatgttttgtccaacaaagttaaaaaggaacacaaaaatgttagattctgaaagattaacatatata |
25574835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 434 - 502
Target Start/End: Original strand, 39331851 - 39331919
Alignment:
| Q |
434 |
taataacttcagctagtaaggatattttgtccaactaagttaaaaaggtacacaaaaatgttagattct |
502 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| || |||| |||||||||||||||||||||| |
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|
| T |
39331851 |
taataacttcagctagtaaggatgctttgtccaactaatttcaaaaagtacacaaaaatgttagattct |
39331919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 337
Target Start/End: Original strand, 44187351 - 44187458
Alignment:
| Q |
224 |
atagtgatgctctaattgaataagggaaaccatttaatccaccttcttgtgattcaactcttcatctcatcattgtcttttggaataattaacccttcac |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||| |
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|
| T |
44187351 |
atagtgatgctctaattgaataagggaaaccatttaatccaccttcttgtgattcaactctt-atctcatcgcagtct-----aataattaacccttcac |
44187444 |
T |
|
| Q |
324 |
ttgcttgcgctgca |
337 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
44187445 |
ttgcttgtgctgca |
44187458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 8047946 - 8048065
Alignment:
| Q |
89 |
atagtgattgtaaggtttttgctttatgccattggagtcattttccgtccgnnnnnnnggcttcaatcttgattcaccttcaagaactatgacatgcttt |
188 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||||||||||||| || ||| |||||||| |||||||||||| ||||||| | ||||||||| |
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|
| T |
8047946 |
atagtaattttaaggtttttcctttatgccattggagtcatttcccatcctcttttttggcttcaaccttgattcacctccaagaac-accacatgcttt |
8048044 |
T |
|
| Q |
189 |
cgaacaatttggttctcatgt |
209 |
Q |
| |
|
| |||| |||||||||||||| |
|
|
| T |
8048045 |
ctaacagtttggttctcatgt |
8048065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 395
Target Start/End: Original strand, 30876072 - 30876242
Alignment:
| Q |
224 |
atagtgatgctctaattgaataagggaaaccatttaatccaccttcttgtgattcaactcttcatctcatcattgtcttttggaataattaacccttcac |
323 |
Q |
| |
|
||||||||||| |||||||| |||| ||||| || | || || |||||| |||||| ||| || ||||||||||| ||||| || ||||| ||||||| |
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|
| T |
30876072 |
atagtgatgctttaattgaaaaaggaaaaccgttccaacctccctcttgttcttcaacactt-atttcatcattgtcctttggtatcattaaaccttcac |
30876170 |
T |
|
| Q |
324 |
ttgcttgcgctgcatttgttttcaactctttcaaatgtgtaataacttcagctagtaaggatgttttgtcca |
395 |
Q |
| |
|
|||||| | | |||| |||| | ||||||||| ||| ||| |||||| | ||||| |||| |||||||| |
|
|
| T |
30876171 |
atgcttgtgtttcattcctttttagctctttcaagtgtctaactacttcaccaagtaatgatgctttgtcca |
30876242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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