View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14355_low_7 (Length: 347)

Name: NF14355_low_7
Description: NF14355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14355_low_7
NF14355_low_7
[»] chr5 (14 HSPs)
chr5 (1-320)||(33589045-33589376)
chr5 (43-108)||(43391089-43391154)
chr5 (314-346)||(16521413-16521445)
chr5 (316-347)||(1055366-1055397)
chr5 (36-99)||(22497692-22497755)
chr5 (36-90)||(4428968-4429022)
chr5 (317-347)||(29183129-29183159)
chr5 (314-347)||(3223429-3223462)
chr5 (318-347)||(25566829-25566858)
chr5 (319-347)||(5891767-5891795)
chr5 (319-347)||(19849550-19849578)
chr5 (310-347)||(27264392-27264431)
chr5 (315-347)||(40297953-40297985)
chr5 (315-347)||(40687956-40687988)
[»] chr1 (9 HSPs)
chr1 (8-106)||(19023308-19023408)
chr1 (36-138)||(4816713-4816815)
chr1 (17-134)||(5299419-5299538)
chr1 (317-346)||(34867738-34867767)
chr1 (315-347)||(8774292-8774324)
chr1 (319-347)||(32558210-32558238)
chr1 (311-347)||(40355838-40355874)
chr1 (311-347)||(46038890-46038926)
chr1 (315-347)||(52143159-52143191)
[»] chr4 (11 HSPs)
chr4 (8-124)||(29542179-29542297)
chr4 (315-347)||(29432041-29432073)
chr4 (316-347)||(34957644-34957675)
chr4 (317-347)||(37973509-37973539)
chr4 (314-347)||(232978-233011)
chr4 (315-347)||(3770173-3770205)
chr4 (319-347)||(19869445-19869473)
chr4 (315-347)||(20472543-20472575)
chr4 (319-347)||(23770054-23770082)
chr4 (315-347)||(30998471-30998503)
chr4 (315-347)||(34158465-34158497)
[»] chr2 (7 HSPs)
chr2 (29-88)||(34120917-34120976)
chr2 (315-347)||(315012-315044)
chr2 (313-347)||(3263027-3263061)
chr2 (316-346)||(35698880-35698910)
chr2 (314-347)||(44078577-44078610)
chr2 (315-347)||(9715136-9715168)
chr2 (319-347)||(11362559-11362587)
[»] chr7 (9 HSPs)
chr7 (15-74)||(10486562-10486623)
chr7 (36-124)||(8178051-8178139)
chr7 (310-345)||(16537366-16537401)
chr7 (310-345)||(16628261-16628296)
chr7 (317-347)||(19778270-19778300)
chr7 (313-347)||(30757511-30757545)
chr7 (314-347)||(25982982-25983015)
chr7 (311-347)||(36801888-36801924)
chr7 (319-347)||(37047663-37047691)
[»] chr3 (6 HSPs)
chr3 (36-114)||(25500956-25501034)
chr3 (315-347)||(53422083-53422115)
chr3 (314-347)||(27766804-27766837)
chr3 (318-347)||(33252772-33252801)
chr3 (315-347)||(12881229-12881261)
chr3 (311-347)||(20982546-20982582)
[»] chr8 (11 HSPs)
chr8 (314-346)||(3345662-3345694)
chr8 (316-347)||(44886191-44886222)
chr8 (36-74)||(2704034-2704072)
chr8 (36-114)||(15074378-15074456)
chr8 (310-347)||(20813725-20813762)
chr8 (319-347)||(1985856-1985884)
chr8 (319-347)||(4147071-4147099)
chr8 (315-347)||(23623739-23623771)
chr8 (319-347)||(37277747-37277775)
chr8 (319-347)||(41015078-41015106)
chr8 (317-345)||(42363861-42363889)
[»] scaffold0283 (1 HSPs)
scaffold0283 (316-347)||(1179-1210)
[»] scaffold1171 (1 HSPs)
scaffold1171 (313-347)||(811-845)
[»] chr6 (4 HSPs)
chr6 (314-347)||(26716658-26716691)
chr6 (314-347)||(31951488-31951521)
chr6 (315-347)||(11277904-11277936)
chr6 (319-347)||(15273266-15273294)
[»] scaffold0951 (1 HSPs)
scaffold0951 (315-347)||(3699-3731)
[»] scaffold0102 (1 HSPs)
scaffold0102 (315-347)||(14592-14624)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 33589376 - 33589045
Alignment:
Q  1 atttggatgtagatctctataacaacaattttcaatttaagttaagttttgttaggagacaaacaaattatgtcccccataacttagcaagggtatcaaa 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33589376 atttggatgtagatctctatgacaacaattttcaatttaagttaagttttgttaggagacaagcaaattatgtcccccataacttagcaagggtatcaaa 33589277  T
Q  101 a-----------ttgtatgatcgtcgccacgttttcaatttgatttcatatattgtgagaaatgaaataatataagttgtttgtcaaagaaaataagatt 189  Q
    |           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33589276 agggtatcaaaattgtatgatcgtcgccatgttttcaatttgatttcatatattgtgagaaatgaaataatataagttgtttgtcaaagaaaagaagatt 33589177  T
Q  190 ttcaaagagtgaaaaaatctttagcatctagataacgtttttcttcttaagttgcagctctaatt-nnnnnnnnnnntagcagataaatgaaaaattagt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||    
T  33589176 ttcaaagagtgaaaaaatctttagcatctagataacgtttttcttcttaagttgcagctctaattaaaaaaaaataatagcagataaatgaaaaattagt 33589077  T
Q  289 ttatagaggatgaacttatagaaaatatttta 320  Q
    ||||||||||||||||||||||||||||||||    
T  33589076 ttatagaggatgaacttatagaaaatatttta 33589045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 43391154 - 43391089
Alignment:
Q  43 taagttttgttaggagacaaacaaattatgtcccccataacttagcaagggtatcaaaattgtatg 108  Q
    |||||||| || |||||||| ||||||||||| ||||||  ||||||||||| |||||| ||||||    
T  43391154 taagttttattcggagacaagcaaattatgtcgcccatactttagcaagggtgtcaaaactgtatg 43391089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 16521445 - 16521413
Alignment:
Q  314 tattttaggtttaattgcacttttggaccccta 346  Q
    |||||||||||||||||||||||||||||||||    
T  16521445 tattttaggtttaattgcacttttggaccccta 16521413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 347
Target Start/End: Original strand, 1055366 - 1055397
Alignment:
Q  316 ttttaggtttaattgcacttttggacccctat 347  Q
    ||||||||||||||||||||||||||||||||    
T  1055366 ttttaggtttaattgcacttttggacccctat 1055397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 22497755 - 22497692
Alignment:
Q  36 tttaagttaagttttgttaggagacaaacaaattatgtcccccataacttagcaagggtatcaa 99  Q
    |||||| |||||||||||||||||||| | |||  |||| | ||||||||||||||||| ||||    
T  22497755 tttaagataagttttgttaggagacaagcgaatgttgtcactcataacttagcaagggtgtcaa 22497692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 4428968 - 4429022
Alignment:
Q  36 tttaagttaagttttgttaggagacaaacaaattatgtcccccataacttagcaa 90  Q
    |||||| |||||||||||||||| ||| |||||| |||| |||||| ||||||||    
T  4428968 tttaagataagttttgttaggaggcaagcaaattctgtcacccatagcttagcaa 4429022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 347
Target Start/End: Original strand, 29183129 - 29183159
Alignment:
Q  317 tttaggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||||    
T  29183129 tttaggtttaattgcacttttggacccctat 29183159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 3223429 - 3223462
Alignment:
Q  314 tattttaggtttaattgcacttttggacccctat 347  Q
    ||||||||| ||||||||||||||||||||||||    
T  3223429 tattttaggcttaattgcacttttggacccctat 3223462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 347
Target Start/End: Complemental strand, 25566858 - 25566829
Alignment:
Q  318 ttaggtttaattgcacttttggacccctat 347  Q
    ||||||||||||||||||||||||||||||    
T  25566858 ttaggtttaattgcacttttggacccctat 25566829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 5891795 - 5891767
Alignment:
Q  319 taggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||    
T  5891795 taggtttaattgcacttttggacccctat 5891767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 19849550 - 19849578
Alignment:
Q  319 taggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||    
T  19849550 taggtttaattgcacttttggacccctat 19849578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 27264431 - 27264392
Alignment:
Q  310 aaaatatttta--ggtttaattgcacttttggacccctat 347  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  27264431 aaaatattttattggtttaattgcacttttggacccctat 27264392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 40297985 - 40297953
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||| ||||||    
T  40297985 attttaggtttaattgcacttttggatccctat 40297953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 40687988 - 40687956
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||| ||||||||||||||||||||||||    
T  40687988 attttaggcttaattgcacttttggacccctat 40687956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 19023408 - 19023308
Alignment:
Q  8 tgtagatctctataacaacaattttcaa--tttaagttaagttttgttaggagacaaacaaattatgtcccccataacttagcaagggtatcaaaattgt 105  Q
    ||||| ||||||| ||||||||||||||  |||||| ||||||||||||||||||||||||||||| || | |||| |||||| ||||  ||||||||||    
T  19023408 tgtaggtctctattacaacaattttcaaactttaagataagttttgttaggagacaaacaaattatatcactcatagcttagctagggagtcaaaattgt 19023309  T
Q  106 a 106  Q
    |    
T  19023308 a 19023308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 4816713 - 4816815
Alignment:
Q  36 tttaagttaagttttgttaggagacaaacaaattatgtcccccataacttagcaagggtatcaaaattgtatgatcgtcgccacgttttcaatttgattt 135  Q
    |||||| ||| || ||| ||||||||| ||||||||||| |||||| |||||||||||  ||||||||||||| ||||| ||| || ||  |||||||||    
T  4816713 tttaagataaattatgtaaggagacaagcaaattatgtcgcccatagcttagcaagggagtcaaaattgtatgctcgtcaccaagtctttgatttgattt 4816812  T
Q  136 cat 138  Q
    |||    
T  4816813 cat 4816815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 5299419 - 5299538
Alignment:
Q  17 ctataacaacaattttcaa--tttaagttaagttttgttaggagacaaacaaattatgtcccccataacttagcaagggtatcaaaattgtatgatcgtc 114  Q
    ||||||||||||||| |||  |||||| ||| ||||||||| |||||| | ||||  ||| |||||  |||||||||||   ||||||||| || |||||    
T  5299419 ctataacaacaatttccaaactttaagataaattttgttagaagacaagcgaattcggtcgcccattgcttagcaagggaggcaaaattgtgtgctcgtc 5299518  T
Q  115 gccacgttttcaatttgatt 134  Q
     |||||||||||||||||||    
T  5299519 accacgttttcaatttgatt 5299538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 34867767 - 34867738
Alignment:
Q  317 tttaggtttaattgcacttttggaccccta 346  Q
    ||||||||||||||||||||||||||||||    
T  34867767 tttaggtttaattgcacttttggaccccta 34867738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 8774292 - 8774324
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||| ||||||||||||||||||||||||    
T  8774292 attttaggcttaattgcacttttggacccctat 8774324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 32558210 - 32558238
Alignment:
Q  319 taggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||    
T  32558210 taggtttaattgcacttttggacccctat 32558238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 40355838 - 40355874
Alignment:
Q  311 aaatattttaggtttaattgcacttttggacccctat 347  Q
    |||||| | ||||||||||||||||||||||||||||    
T  40355838 aaatatataaggtttaattgcacttttggacccctat 40355874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 46038890 - 46038926
Alignment:
Q  311 aaatattttaggtttaattgcacttttggacccctat 347  Q
    |||| |||||||||||||||||||||||| |||||||    
T  46038890 aaattttttaggtttaattgcacttttggccccctat 46038926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 52143159 - 52143191
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    ||||| |||||||||||||||||||||||||||    
T  52143159 atttttggtttaattgcacttttggacccctat 52143191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 29542179 - 29542297
Alignment:
Q  8 tgtagatctctataacaacaattttcaa--tttaagttaagttttgttaggagacaaacaaattatgtcccccataacttagcaagggtatcaaaattgt 105  Q
    ||||| ||||||| ||||||||||||||  |||||| ||| ||||||||||| |||| ||||||||||| |||||  |||||| ||||  ||||||||||    
T  29542179 tgtaggtctctattacaacaattttcaaactttaagataaattttgttaggatacaagcaaattatgtcgcccatggcttagctagggagtcaaaattgt 29542278  T
Q  106 atgatcgtcgccacgtttt 124  Q
    | | ||||| ||| |||||    
T  29542279 acgctcgtcaccatgtttt 29542297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 29432041 - 29432073
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||||||    
T  29432041 attttaggtttaattgcacttttggacccctat 29432073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 347
Target Start/End: Complemental strand, 34957675 - 34957644
Alignment:
Q  316 ttttaggtttaattgcacttttggacccctat 347  Q
    ||||||||||||||||||||||||||||||||    
T  34957675 ttttaggtttaattgcacttttggacccctat 34957644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 347
Target Start/End: Original strand, 37973509 - 37973539
Alignment:
Q  317 tttaggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||||    
T  37973509 tttaggtttaattgcacttttggacccctat 37973539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 233011 - 232978
Alignment:
Q  314 tattttaggtttaattgcacttttggacccctat 347  Q
    ||||||||| ||||||||||||||||||||||||    
T  233011 tattttaggcttaattgcacttttggacccctat 232978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 3770173 - 3770205
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||| ||||||||||||||||||||||||    
T  3770173 attttaggcttaattgcacttttggacccctat 3770205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 19869473 - 19869445
Alignment:
Q  319 taggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||    
T  19869473 taggtttaattgcacttttggacccctat 19869445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 20472543 - 20472575
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    ||||| |||||||||||||||||||||||||||    
T  20472543 atttttggtttaattgcacttttggacccctat 20472575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 23770082 - 23770054
Alignment:
Q  319 taggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||    
T  23770082 taggtttaattgcacttttggacccctat 23770054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 30998503 - 30998471
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||| ||||||||||||||||||||||||||||    
T  30998503 atttaaggtttaattgcacttttggacccctat 30998471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 34158465 - 34158497
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||| ||||||||||||||    
T  34158465 attttaggtttaattgcatttttggacccctat 34158497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 34120976 - 34120917
Alignment:
Q  29 ttttcaatttaagttaagttttgttaggagacaaacaaattatgtcccccataacttagc 88  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||    
T  34120976 ttttaaatttaagataaattttgttaggagacaaacaaattatgtcgcccatgacttagc 34120917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 315012 - 315044
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||||||    
T  315012 attttaggtttaattgcacttttggacccctat 315044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 3263027 - 3263061
Alignment:
Q  313 atattttaggtttaattgcacttttggacccctat 347  Q
    |||||||||| ||||||||||||||||||||||||    
T  3263027 atattttaggcttaattgcacttttggacccctat 3263061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 346
Target Start/End: Original strand, 35698880 - 35698910
Alignment:
Q  316 ttttaggtttaattgcacttttggaccccta 346  Q
    |||||||||||||||||||||||||||||||    
T  35698880 ttttaggtttaattgcacttttggaccccta 35698910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 44078610 - 44078577
Alignment:
Q  314 tattttaggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||| |||||||    
T  44078610 tattttaggtttaattgcacttttggccccctat 44078577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 9715168 - 9715136
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||| ||||||||||||||||||||||||    
T  9715168 attttaggcttaattgcacttttggacccctat 9715136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 11362559 - 11362587
Alignment:
Q  319 taggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||    
T  11362559 taggtttaattgcacttttggacccctat 11362587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 10486623 - 10486562
Alignment:
Q  15 ctctataacaacaattttcaa--tttaagttaagttttgttaggagacaaacaaattatgtc 74  Q
    |||||| ||||||||||||||  |||||| |||||||||||||||||||| |||||||||||    
T  10486623 ctctattacaacaattttcaaactttaagataagttttgttaggagacaagcaaattatgtc 10486562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 8178139 - 8178051
Alignment:
Q  36 tttaagttaagttttgttaggagacaaacaaattatgtcccccataacttagcaagggtatcaaaattgtatgatcgtcgccacgtttt 124  Q
    |||||| ||||||||| |||||||||| |||||| |||  ||||||  ||||| ||||  ||||||||||||| | |||||||||||||    
T  8178139 tttaagataagttttgctaggagacaagcaaattttgttgcccatacattagctagggagtcaaaattgtatgctagtcgccacgtttt 8178051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 345
Target Start/End: Complemental strand, 16537401 - 16537366
Alignment:
Q  310 aaaatattttaggtttaattgcacttttggacccct 345  Q
    ||||||||||||| ||||||||||||||||||||||    
T  16537401 aaaatattttaggcttaattgcacttttggacccct 16537366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 345
Target Start/End: Original strand, 16628261 - 16628296
Alignment:
Q  310 aaaatattttaggtttaattgcacttttggacccct 345  Q
    ||||||||||||| ||||||||||||||||||||||    
T  16628261 aaaatattttaggcttaattgcacttttggacccct 16628296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 347
Target Start/End: Original strand, 19778270 - 19778300
Alignment:
Q  317 tttaggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||||    
T  19778270 tttaggtttaattgcacttttggacccctat 19778300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 30757545 - 30757511
Alignment:
Q  313 atattttaggtttaattgcacttttggacccctat 347  Q
    ||||| |||||||||||||||||||||||||||||    
T  30757545 atattataggtttaattgcacttttggacccctat 30757511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 25982982 - 25983015
Alignment:
Q  314 tattttaggtttaattgcacttttggacccctat 347  Q
    ||||||||| ||||||||||||||||||||||||    
T  25982982 tattttaggcttaattgcacttttggacccctat 25983015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 36801924 - 36801888
Alignment:
Q  311 aaatattttaggtttaattgcacttttggacccctat 347  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  36801924 aaataatttaggtttaattgcacttttggccccctat 36801888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 37047663 - 37047691
Alignment:
Q  319 taggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||    
T  37047663 taggtttaattgcacttttggacccctat 37047691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 25500956 - 25501034
Alignment:
Q  36 tttaagttaagttttgttaggagacaaacaaattatgtcccccataacttagcaagggtatcaaaattgtatgatcgtc 114  Q
    |||||| ||| || ||| ||||||||| |||||| |||| ||||||  |||||||||| |||||||||||||| |||||    
T  25500956 tttaagataaattatgtaaggagacaagcaaattgtgtcgcccatagtttagcaagggcatcaaaattgtatgctcgtc 25501034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 53422083 - 53422115
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||||||    
T  53422083 attttaggtttaattgcacttttggacccctat 53422115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 27766837 - 27766804
Alignment:
Q  314 tattttaggtttaattgcacttttggacccctat 347  Q
    ||||||||| ||||||||||||||||||||||||    
T  27766837 tattttaggcttaattgcacttttggacccctat 27766804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 347
Target Start/End: Complemental strand, 33252801 - 33252772
Alignment:
Q  318 ttaggtttaattgcacttttggacccctat 347  Q
    ||||||||||||||||||||||||||||||    
T  33252801 ttaggtttaattgcacttttggacccctat 33252772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 12881229 - 12881261
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||| ||||||||||||||||||||||||    
T  12881229 attttaggcttaattgcacttttggacccctat 12881261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 20982582 - 20982546
Alignment:
Q  311 aaatattttaggtttaattgcacttttggacccctat 347  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  20982582 aaatattgtaggcttaattgcacttttggacccctat 20982546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 3345694 - 3345662
Alignment:
Q  314 tattttaggtttaattgcacttttggaccccta 346  Q
    |||||||||||||||||||||||||||||||||    
T  3345694 tattttaggtttaattgcacttttggaccccta 3345662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 347
Target Start/End: Complemental strand, 44886222 - 44886191
Alignment:
Q  316 ttttaggtttaattgcacttttggacccctat 347  Q
    ||||||||||||||||||||||||||||||||    
T  44886222 ttttaggtttaattgcacttttggacccctat 44886191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 2704072 - 2704034
Alignment:
Q  36 tttaagttaagttttgttaggagacaaacaaattatgtc 74  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  2704072 tttaagataagttttgttaggagacaagcaaattatgtc 2704034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 15074456 - 15074378
Alignment:
Q  36 tttaagttaagttttgttaggagacaaacaaattatgtcccccataacttagcaagggtatcaaaattgtatgatcgtc 114  Q
    |||||| ||||||||||||| |||||| |||||| |||| | ||||   ||||||||  |||||||||||||| |||||    
T  15074456 tttaagataagttttgttagaagacaagcaaattgtgtcgctcatagtatagcaaggacatcaaaattgtatgctcgtc 15074378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 20813725 - 20813762
Alignment:
Q  310 aaaatattttaggtttaattgcacttttggacccctat 347  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  20813725 aaaatattttaggcttaattgcacttgtggacccctat 20813762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 1985884 - 1985856
Alignment:
Q  319 taggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||    
T  1985884 taggtttaattgcacttttggacccctat 1985856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 4147099 - 4147071
Alignment:
Q  319 taggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||    
T  4147099 taggtttaattgcacttttggacccctat 4147071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 23623771 - 23623739
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||| ||||    
T  23623771 attttaggtttaattgcacttttggacctctat 23623739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 37277775 - 37277747
Alignment:
Q  319 taggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||    
T  37277775 taggtttaattgcacttttggacccctat 37277747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 41015106 - 41015078
Alignment:
Q  319 taggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||    
T  41015106 taggtttaattgcacttttggacccctat 41015078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Complemental strand, 42363889 - 42363861
Alignment:
Q  317 tttaggtttaattgcacttttggacccct 345  Q
    |||||||||||||||||||||||||||||    
T  42363889 tttaggtttaattgcacttttggacccct 42363861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 347
Target Start/End: Original strand, 1179 - 1210
Alignment:
Q  316 ttttaggtttaattgcacttttggacccctat 347  Q
    ||||||||||||||||||||||||||||||||    
T  1179 ttttaggtttaattgcacttttggacccctat 1210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 811 - 845
Alignment:
Q  313 atattttaggtttaattgcacttttggacccctat 347  Q
    |||||||||| ||||||||||||||||||||||||    
T  811 atattttaggcttaattgcacttttggacccctat 845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 26716691 - 26716658
Alignment:
Q  314 tattttaggtttaattgcacttttggacccctat 347  Q
    ||||||||| ||||||||||||||||||||||||    
T  26716691 tattttaggcttaattgcacttttggacccctat 26716658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 31951521 - 31951488
Alignment:
Q  314 tattttaggtttaattgcacttttggacccctat 347  Q
    ||||||||| ||||||||||||||||||||||||    
T  31951521 tattttaggcttaattgcacttttggacccctat 31951488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 11277936 - 11277904
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||| ||||||||||||||||    
T  11277936 attttaggtttaattgtacttttggacccctat 11277904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 15273294 - 15273266
Alignment:
Q  319 taggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||||    
T  15273294 taggtttaattgcacttttggacccctat 15273266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 3699 - 3731
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    ||||| |||||||||||||||||||||||||||    
T  3699 atttttggtttaattgcacttttggacccctat 3731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 14624 - 14592
Alignment:
Q  315 attttaggtttaattgcacttttggacccctat 347  Q
    |||||||||||||||||||||||||||| ||||    
T  14624 attttaggtttaattgcacttttggacctctat 14592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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