View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14355_low_9 (Length: 312)
Name: NF14355_low_9
Description: NF14355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14355_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 45 - 294
Target Start/End: Complemental strand, 26563247 - 26563002
Alignment:
| Q |
45 |
atcatatagctagatatctaactaggagattatgtgagtgacttcaaatnnnnnnnnnnnnnagcaccattgtttgtgggtgtaagattgagtattttag |
144 |
Q |
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| T |
26563247 |
atcatgtagctagatttctaactaggagattaggtgagtgacttcaaatagagagaga----agcaccattgtttgtgggtgtaagattgagtattttgg |
26563152 |
T |
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| Q |
145 |
tggctgcctccaaaacccatgattctggggattgacagagagatgaggaagcaccgtagcaagacgcaagtatgttagtgctgatgactcctgtattgag |
244 |
Q |
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| T |
26563151 |
tggcttcctccaaaacccatgattctggggattgatagagagatgaggaagcaccgtagcaagacgcaagtatgttagtgctgatgactcctgtattgag |
26563052 |
T |
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| Q |
245 |
tgccaccactgccattcctttaggaaactcttcagcaacagacttggtga |
294 |
Q |
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| T |
26563051 |
tgccatcactgccattcctttaggaaactcttcagcaacagacttggtga |
26563002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 26560311 - 26560583
Alignment:
| Q |
16 |
aatactaatacaaagaaagttgataatcgatcatatagctagatatctaactaggagattatgtgagtgacttcaaatnnnnnnnnnnnnnagcaccatt |
115 |
Q |
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| T |
26560311 |
aatactaatacaaatcaagtcgataatcaatcatgtaagtagatatctagctaggagattaggtgagtgacttcaaatagagagaga----agaaccatt |
26560406 |
T |
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| Q |
116 |
gtttgtgggtgtaagattgagtattttagtggctgcctccaaaacccatgattctggggattgacagagagatgaggaagcaccgtagcaagacgcaagt |
215 |
Q |
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| T |
26560407 |
atctgttggtgtaagattgagtatcttggtggctgcctccaaaacccatgattctgggaatcgataaagagatgaggaagcaccatagcaaaaagcaagc |
26560506 |
T |
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| Q |
216 |
atgttagtgctgatgactcctgtattgagtgccaccactgccattcctttaggaaactcttcagcaacagacttggt |
292 |
Q |
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| T |
26560507 |
atgttagtgttgatgacccctggattgagtgccaccactgccattactttaggcaactcttcaacaacagacttggt |
26560583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 107 - 294
Target Start/End: Original strand, 24889857 - 24890044
Alignment:
| Q |
107 |
agcaccattgtttgtgggtgtaagattgagtattttagtggctgcctccaaaacccatgattctggggattgacagagagatgaggaagcaccgtagcaa |
206 |
Q |
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| T |
24889857 |
agcaccattgtctgcaggtgtaagattgagtatcttggtggctgcctctgaagcccatgattctggggattgataaagcgatgaggaagcaccatagcat |
24889956 |
T |
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| Q |
207 |
gacgcaagtatgttagtgctgatgactcctgtattgagtgccaccactgccattcctttaggaaactcttcagcaacagacttggtga |
294 |
Q |
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| T |
24889957 |
gaagcaagcatgtcagtgttgatgactcctggattcagtgccactactgccattcctttaggcaactcttcagcaacagacttagtga |
24890044 |
T |
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