View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14356_high_11 (Length: 394)

Name: NF14356_high_11
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14356_high_11
NF14356_high_11
[»] chr5 (3 HSPs)
chr5 (1-365)||(19586889-19587252)
chr5 (13-365)||(19582201-19582555)
chr5 (13-365)||(19591030-19591384)
[»] chr8 (1 HSPs)
chr8 (98-166)||(20789355-20789423)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 19587252 - 19586889
Alignment:
Q  1 caaattgcaaaagagttccagcttcacataaatatatttgggcacctgaaacaagaatcatactattgcatatgagtactttaattaaaatagtatata- 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  19587252 caaattgcaaaagagttccagcttcacataaatatatttgggcacctgaaacaagaatcaaactattgcatatgagtactttaattaaaatagtatatat 19587153  T
Q  100 -ctaatgaatgaaacactgcatgagttaatattctttgtaaccaatttgattccaataatgtaaatttcaataactcatgcatggagattaattaaactt 198  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19587152 actaattaatgaaacactgcatgagttaatattctttgtaaccaatttgatcccaataatgtaaatttcaagaactcatgcatggagattaattaaactt 19587053  T
Q  199 taactatcaccttaataacatgaaattaaattctcttcattaagattatgaaattaattaaacttgatcaatatataaatcagaaattagccacaattaa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||    
T  19587052 taactatcaccttaataacatgaaattaaattctcttcattaagattatgaaattaattaaacttgatcaatatataaatcagaa---agccagaattaa 19586956  T
Q  299 gtatcccttaattaaagaattcatgaagaatgttctgatgagtccaatgatgatgaaaacaactaac 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19586955 gtatcccttaattaaagaattcatgaagaatgttctgatgagtccaatgatgatgaaaacaactaac 19586889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 19582201 - 19582555
Alignment:
Q  13 gagttccagcttcacataaatatatttgggcacctgaaacaagaatcatactattgcatatgagtactttaattaaaatagtatatactaatgaatgaaa 112  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||            |||||||||||||| |||  |||||||||||||    
T  19582201 gagttccagcttcacacaaatatatttggggacctgaaacaagaatcataatattt-----------tttaattaaaatagcata--ctaatgaatgaaa 19582287  T
Q  113 cactgcat---gagttaatattctttgtaaccaatttgattccaataatgtaaatttcaataactcatgcatg----gagattaattaaactttaactat 205  Q
    ||||| ||   ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  19582288 cactgaataatgagttaatattctttgttaccaatttgatcccaataacgtaaatttcaataactcatgcatgcatggagattaattaaactttaactat 19582387  T
Q  206 caccttaat-----------aacatgaaattaaattctcttcattaagattatgaaattaattaaacttgatcaatatataaatcagaaattagccacaa 294  Q
    |||||||||           ||||||||| ||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||   ||||| ||    
T  19582388 caccttaatttcatttcaataacatgaaagtaaattctcttcattaagattctagaattaattaaacttgatcaatatataaatcagaa---agccaaaa 19582484  T
Q  295 ttaagtatcccttaattaaagaattcatgaagaatgttctgatgagtccaatgatgatgaaaacaactaac 365  Q
      |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  19582485 caaagtatcccttaataaaagaattcatcaagaatgttctgatgagtccaatgatgatgaaaactactaac 19582555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 19591384 - 19591030
Alignment:
Q  13 gagttccagcttcacataaatatatttgggcacctgaaacaagaatcatactattgcatatgagtactttaattaaaatagtatatactaatgaatgaaa 112  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||            |||||||||||||| |||  |||||||||||||    
T  19591384 gagttccagcttcacacaaatatatttggggacctgaaacaagaatcataatattt-----------tttaattaaaatagcata--ctaatgaatgaaa 19591298  T
Q  113 cactgcat---gagttaatattctttgtaaccaatttgattccaataatgtaaatttcaataactcatgcatg----gagattaattaaactttaactat 205  Q
    ||||| ||   ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  19591297 cactgaataatgagttaatattctttgttaccaatttgatcccaataacgtaaatttcaataactcatgcatgcatggagattaattaaactttaactat 19591198  T
Q  206 caccttaat-----------aacatgaaattaaattctcttcattaagattatgaaattaattaaacttgatcaatatataaatcagaaattagccacaa 294  Q
    |||||||||           ||||||||| ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||   |||| ||    
T  19591197 caccttaatttcatttcaataacatgaaagtaaattctcttcattaagattctagaattaattaaacttgatcaatatataaatcagaaa---gccaaaa 19591101  T
Q  295 ttaagtatcccttaattaaagaattcatgaagaatgttctgatgagtccaatgatgatgaaaacaactaac 365  Q
      |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  19591100 caaagtatcccttaataaaagaattcatcaagaatgttctgatgagtccaatgatgatgaaaactactaac 19591030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 20789423 - 20789355
Alignment:
Q  98 tactaatgaatgaaacactgcatgagttaatattctttgtaaccaatttgattccaataatgtaaattt 166  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  20789423 tactaataaatgaaacactgcatgagttaatattctttgtaaccaatttgatcccaataacgtaaattt 20789355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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