View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_high_15 (Length: 338)
Name: NF14356_high_15
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 50307505 - 50307200
Alignment:
| Q |
20 |
ctcaggtatattttcaacttgatcacgttcttgaatattctcaattttttctacttccacaacttgatcatgaggttgattaatctcatgcacactttca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50307505 |
ctcaggtatattttcaacttgatcacgttcttgaatattctcaattttttctacttccacaacttgatcatgaggttgattaatctcatgcacactttca |
50307406 |
T |
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| Q |
120 |
acttgatcatgttcttgaatattctcaatttcttctacttccccagcattatcattgtttgtgatagcttctttaacttttggttctgtcttagtttcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50307405 |
acttgatcatgttcttgaatattctcaatttcttctacttccccagcattatcattgtttgtgatagcttctttaacttttggttctgtcttagtttcaa |
50307306 |
T |
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| Q |
220 |
caacattgattgtttctgttgtttcttcattattagtactactttttgtagcaagattctttgaactactcttcttagtagtaccttgttttggagtctt |
319 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50307305 |
caacattgattgtttctgttgtttcttc---attagtactactttttgtagcaagattctttgaactactcttcttagtagtaccttgttttggagtctt |
50307209 |
T |
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| Q |
320 |
tgatgatgt |
328 |
Q |
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||||||||| |
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| T |
50307208 |
tgatgatgt |
50307200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 50307745 - 50307605
Alignment:
| Q |
23 |
aggtatattttcaacttgatcacgttcttgaatattctcaattttttctacttccacaacttgatcatgaggttgattaatctcatgcacactttcaact |
122 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||| | ||| |||||||| |
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| T |
50307745 |
aggtacattttcaacttgatcatgttcttgaatattctcaattttttctacttccccaacttg---atgtgattgattaatctcaggtacattttcaact |
50307649 |
T |
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| Q |
123 |
tgatcatgttcttgaatattctcaatttcttctacttccccagc |
166 |
Q |
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|||||| ||||| ||||||||||||||| ||||||||||||||| |
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| T |
50307648 |
tgatcacgttctagaatattctcaattttttctacttccccagc |
50307605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 50307667 - 50307529
Alignment:
| Q |
20 |
ctcaggtatattttcaacttgatcacgttcttgaatattctcaattttttctacttccacaacttgatcatgaggttgattaatctcatgcacactttca |
119 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| || || ||||| | ||||||||||||| | ||| | ||| |
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| T |
50307667 |
ctcaggtacattttcaacttgatcacgttctagaatattctcaattttttctacttccccagct---tcatgtgattgattaatctcaggtacattatca |
50307571 |
T |
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| Q |
120 |
acttgatcatgttcttgaatattctcaatttcttctacttcc |
161 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||| |
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| T |
50307570 |
acttgatcgcgttcttgaatattctcaattttttctacttcc |
50307529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 50307586 - 50307448
Alignment:
| Q |
20 |
ctcaggtatattttcaacttgatcacgttcttgaatattctcaattttttctacttccacaacttgatcatgaggttgattaatctcatgcacactttca |
119 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||| | | ||||||||||||| | | | ||||| |
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| T |
50307586 |
ctcaggtacattatcaacttgatcgcgttcttgaatattctcaattttttctacttcctcggcttgat---gtgattgattaatctcaggtatattttca |
50307490 |
T |
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| Q |
120 |
acttgatcatgttcttgaatattctcaatttcttctacttcc |
161 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
50307489 |
acttgatcacgttcttgaatattctcaattttttctacttcc |
50307448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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