View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_high_17 (Length: 331)
Name: NF14356_high_17
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 13555561 - 13555877
Alignment:
| Q |
1 |
tctaaacgagataaactcaaagttacatagctccaaatagtgggaaatttggaccaaataacctccaaaatgccaagaaaaaatctgcataggttaattt |
100 |
Q |
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| T |
13555561 |
tctaaacgagataaactcaaaattacatagctccaaatagtgggaaatttggaccaaataacctccaaaatgccaagaaaaaatctgcataggttaattt |
13555660 |
T |
|
| Q |
101 |
tctacaatctgtnnnnnnnnn-catggtgccagttgcatactgctaatatttatacagacagatttagcagaatttgactgaagacaaaatgtagattga |
199 |
Q |
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| T |
13555661 |
tctacaatctgtaaaaaaaaaacatggtgccagttgcatactgctaatatttatacagacagatttagcagaatttgactgaagacaaaatgtagattga |
13555760 |
T |
|
| Q |
200 |
aattcttgcagagcttaaaccttaaatagatcaggattaaattggaacctagttagtagttagtatctctccattaacctctatcagcataattatatca |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13555761 |
aattcttgcagagcttaaaccttaaatagatcaggattaaattggaacctagttagtagttagtatctctccattaacctctaccagcataattatatca |
13555860 |
T |
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| Q |
300 |
caatttggacattgaag |
316 |
Q |
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||||| |||||||||| |
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| T |
13555861 |
caattgagacattgaag |
13555877 |
T |
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