View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_high_20 (Length: 325)
Name: NF14356_high_20
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 125 - 307
Target Start/End: Complemental strand, 9966103 - 9965921
Alignment:
| Q |
125 |
gcaaccaacctgcatgttaactttcaaaacatcaagaggagtggtagcaagatgagtggtaccagcactgagcattcctccaatggtgcaaagggcataa |
224 |
Q |
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| T |
9966103 |
gcaaccaacctgcatgttaactttcaaaacatcaagaggagtggtagcaagatgagtggtaccagcactgagcattcctccaatggtgcaaagggcataa |
9966004 |
T |
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| Q |
225 |
taccttggcgttaattcctgtgagattcctccttccatggccgccatgatccttttcttcagtgtaaaaatcacgttactgtt |
307 |
Q |
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| T |
9966003 |
taccttggcgttaattcctgtgagattcctccttccatggccgccatgatccttttcttcagtgtaaaaatcacgttactgtt |
9965921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9966227 - 9966168
Alignment:
| Q |
1 |
caaaagggtatctaaaaaatccaatttttcccctaccccatttctaaaacctaatcaaac |
60 |
Q |
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| T |
9966227 |
caaaagggtatctaaaaaatccaatttttccactaccccatttctaaaacctaatcaaac |
9966168 |
T |
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