View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_high_26 (Length: 292)
Name: NF14356_high_26
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 21560306 - 21560569
Alignment:
| Q |
10 |
attattctcccaagaataagaatcacgaaatgatcgcaaccctaattcgctagtcacaatatgttaatcgaaatagcaatctagagaaagttttctcaca |
109 |
Q |
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| T |
21560306 |
attattctcccaagaataagaatcacgaaatgatcgcaaccctaattcgctagtcacaatatgttaatcgaaatagctatctagagaaagttttctcaca |
21560405 |
T |
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| Q |
110 |
tttgtgaatgccaagttgataacataggaaaggaattgtccaccagtgatgagaaatccattgagactaacaagtgctcctctaaccctagttggtgaag |
209 |
Q |
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| T |
21560406 |
tttgtgaatgccaagttgataacataggaaaggaattgtccaccagtgatgagaaatccattgagactaacaagtgctcctctaaccctagttggtgaag |
21560505 |
T |
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| Q |
210 |
cttctgagatatataaaggagaagccattgaagccattccaacaccaaaaccaacaaagactct |
273 |
Q |
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| T |
21560506 |
cttctgagatatataaaggagaagccattgaagccattccaacaccaagaccaacaaagactct |
21560569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 119 - 272
Target Start/End: Original strand, 21493241 - 21493394
Alignment:
| Q |
119 |
gccaagttgataacataggaaaggaattgtccaccagtgatgagaaatccattgagactaacaagtgctcctctaaccctagttggtgaagcttctgaga |
218 |
Q |
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| T |
21493241 |
gccaagttgatgagataggaaaggaactgtccaccagtgatgagaaaactgttgagactaacaagagcacctctaactcgagttggtgaagcctcagaga |
21493340 |
T |
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| Q |
219 |
tatataaaggagaagccattgaagccattccaacaccaaaaccaacaaagactc |
272 |
Q |
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| T |
21493341 |
tgtacaaaggagatgccattgaagccatcccgacaccaagaccaacaaatactc |
21493394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 33115447 - 33115383
Alignment:
| Q |
113 |
gtgaatgccaagttgataacataggaaaggaattgtccaccagtgatgagaaatccattgagact |
177 |
Q |
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||||| ||||||||||| | |||||| || |||||||| |||||||||||||| || |||||||| |
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| T |
33115447 |
gtgaaggccaagttgatgagataggagagaaattgtcccccagtgatgagaaaaccgttgagact |
33115383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 33114927 - 33114876
Alignment:
| Q |
206 |
gaagcttctgagatatataaaggagaagccattgaagccattccaacaccaa |
257 |
Q |
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| T |
33114927 |
gaagcttctgaaatgtacagtggagaagccattgaagccattccaacaccaa |
33114876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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