View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_high_28 (Length: 290)
Name: NF14356_high_28
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 27992337 - 27992064
Alignment:
| Q |
1 |
ctttattcattgataagaatgagcacaatcctttgatggataatgtattataatttgaaaaataannnnnnnnnngtgcttgtatgtttatacgttatat |
100 |
Q |
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| T |
27992337 |
ctttattcattgataagaatgagcacaatcctttgatggataatgtattataatttgaaaaatatattttttttggtgcttgtatgtttataccttatat |
27992238 |
T |
|
| Q |
101 |
cataaaaatttgattcatatctgttgaattgatttcataactctaaaaccagttattttcattaagagataacgaattgagcttggatcggttcactttg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27992237 |
cataaaaacttgattcatatctgttgaattgatttcataactctaaaaccatttatgttcattaagagataatgaattgagcttggatcggttcactttg |
27992138 |
T |
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| Q |
201 |
attgtcactacggagtgtgttgaattttttctgcatataaaacttgatgaaaatggcatcaaagtcaagaatat |
274 |
Q |
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| T |
27992137 |
attgtcactacggagtgtgttgaattttttctgcatataaaacttgatgaaaatggcatcaaggtcaagaatat |
27992064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 28002160 - 28001881
Alignment:
| Q |
1 |
ctttattcattgataagaatgagcacaatcctttgatggataatgtattataatttgaaaaataannnnnnnnnngtgcttgtatgtttatacgttatat |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||| || |
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| T |
28002160 |
ctttattcattgataagaatgaacacaatcctttgaatgataatgtcttataatttgaaaaataaaattattttggtgcttgtatgtttataccttagat |
28002061 |
T |
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| Q |
101 |
cataaaaatttgattcatatctgttgaattgatttcataa------ctctaaaaccagttattttcattaagagataacgaattgagcttggatcggttc |
194 |
Q |
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| T |
28002060 |
cataaaatcttgatttatttatattgaattgatgtcataaagagcgctctaaaaccagttattttcatgaagagataacgaattgagattggcttggttc |
28001961 |
T |
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| Q |
195 |
actttgattgtcactacggagtgtgttgaattttttctgcatataaaacttgatgaaaatggcatcaaagtcaagaatat |
274 |
Q |
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| T |
28001960 |
actttgattgtcactgtggagtgtgttgaattttttctgcatataaaacttgatgaaaatagcatcaaagtcaaaaatat |
28001881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 27993003 - 27993213
Alignment:
| Q |
1 |
ctttattcattgataagaatgagcacaatcctttgatggataatgtattataatttgaaaaataannnnnnnnnngtgcttgtatgtttatacgttatat |
100 |
Q |
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|||||||||||||||||||||| |||||||| |||| ||||||| | |||||||||| ||||||| ||||||| |||||||| |||||| |
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| T |
27993003 |
ctttattcattgataagaatgaacacaatccgttgaaggataatatcttataatttgtaaaataaaattcttttggtgcttgcatgtttatgtcttatat |
27993102 |
T |
|
| Q |
101 |
cataaaaatttgattcatatctgttgaattgatttcataa------ctctaaaaccagttattttcattaagagataacgaattgagcttggatcggttc |
194 |
Q |
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| T |
27993103 |
cataaaaacttgatttatatatgttcgtttgttttcataaagaacactctaaaactagttattttcataaagagataacgaattgagcttggaatgattc |
27993202 |
T |
|
| Q |
195 |
actttgattgt |
205 |
Q |
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||||||||||| |
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| T |
27993203 |
actttgattgt |
27993213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 28002893 - 28002956
Alignment:
| Q |
142 |
tctaaaaccagttattttcattaagagataacgaattgagcttggatcggttcactttgattgt |
205 |
Q |
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| T |
28002893 |
tctaaaatcagatattttcatgaagagataacgaattgaacttggattggttcactttgattgt |
28002956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 39376986 - 39377048
Alignment:
| Q |
3 |
ttattcattgataagaatgagcacaatcctttgatggataatgtattataatttgaaaaataa |
65 |
Q |
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|||||||||||||||||||| ||||||||||||| |||| || | |||||||||| ||||||| |
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| T |
39376986 |
ttattcattgataagaatgaacacaatcctttgaaggatgatatcttataatttgcaaaataa |
39377048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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