View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_high_3 (Length: 558)
Name: NF14356_high_3
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 34718020 - 34718564
Alignment:
| Q |
1 |
agtttttagtggtaaaatgataattgtgtcagtc--aaactcagagaagcttaggctagaaattgtgttttttattctaggagaattctcatataaatga |
98 |
Q |
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| T |
34718020 |
agtttttagtggtaagatgataattgtgtcagtataaaactcagagaagcttaggctagaaattgtgttttttattctaggagaattctcatataaatga |
34718119 |
T |
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| Q |
99 |
gagttaatatataaagtactcaaaaaataaaa-gaattctcatataaatacaacttaattacaagctagggttgatgttgagcccataaatcatcaactg |
197 |
Q |
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| T |
34718120 |
gagttaatatataaagtactcaaaaaataaaaagaattctcatataaatacaacttaattacaagctagggttgatgttgagcccataaatcatcaactg |
34718219 |
T |
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| Q |
198 |
tcatttattaattctgcaatttataatcctaattaacataacggttacaattatcctatttagcatttctagcttttgtcaataaaacattaacctattt |
297 |
Q |
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| T |
34718220 |
tcatttattaattctgcaatttataatcctaattaacataacggttacaattatcctatttagcatttctagcttttgtcaataaaacattaacctattt |
34718319 |
T |
|
| Q |
298 |
gctagttgcacatatgtactagtgaataatgaatccctcctggacattccctccattattaagaaatagttaagtgatataaatttagattaaaacactc |
397 |
Q |
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| T |
34718320 |
actagttacacatatgtactagtgaataatgaatccctcctggacattccctccattattaagaaatagttaagtgatataaatttagattaaaacaccc |
34718419 |
T |
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| Q |
398 |
ttatttaacccctttcaagtatcaaaaactacactgcatattttcatgtcttttcctcaaatgagggtatcgtcgaaagaaaaaacatcatttagatact |
497 |
Q |
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| T |
34718420 |
ttatttaacccctttcaagtatcaaaaactacactgcatattttcatgtcttttcctcaaatgagggtatcgtcgaaagaaaaaacatcatttagatatt |
34718519 |
T |
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| Q |
498 |
tgatttctaaaatatcaatagttttgaaataattataaaaaactt |
542 |
Q |
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| T |
34718520 |
tgatttctaaaatatcaatagttttgaaataattataaaaaactt |
34718564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 18938650 - 18938589
Alignment:
| Q |
2 |
gtttttagtggtaaaatgataattgtgtcagtcaaactcagagaagcttaggctagaaattgtgtt |
67 |
Q |
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| T |
18938650 |
gttttaagtggaaaaatgataattgtgtca----aactcagagaagcttaggctagaaagtgtgtt |
18938589 |
T |
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