View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14356_high_32 (Length: 265)
Name: NF14356_high_32
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_high_32 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 15161247 - 15161495
Alignment:
| Q |
17 |
tattagtaacaaactactagttaacaaaatctataaaaagcaaaaagacaatcaataccacttgaattccacatcaatacaaaaaggagaacctatagtt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15161247 |
tattagtaacaaactactagttaacaaaatctataaaaaccaaaaagacaatcaataccacttgaattccacatcaatacaaaaaggagaacctatagtt |
15161346 |
T |
|
| Q |
117 |
tctgaatcaaatagatagaactattgttagcagagaacacagttcacagaaacaagcatgtgctggactatttattagcatttgtgatgataaaagtcat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15161347 |
tctgaatcaaatagatagaactattgttagcagagaacacagttcacagaaacaagcatgtactggactatttattagcatttgtgatgataaaagtcat |
15161446 |
T |
|
| Q |
217 |
agaaatgaccaaattggcaaattagactagcaccggcacgtacaccaca |
265 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15161447 |
agaaatgaccaaattgacaaattagactagcaccggcacgtacaccaca |
15161495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 124 - 254
Target Start/End: Complemental strand, 18812589 - 18812456
Alignment:
| Q |
124 |
caaatagatagaactattgttagcagagaacacagttcacagaaacaagcatgtgctggactatttattagcatttgtgatgataaaagtcatagaa--- |
220 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18812589 |
caaatagagagaactattgttagcagagaacac-gttcatagaaacaagcatgtgcttgacattttattagcatttgtgatgataaaagtcatagaaatg |
18812491 |
T |
|
| Q |
221 |
-atgaccaaattggcaaattagactagcaccggca |
254 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
18812490 |
aatgaccaaattggaaaattagactagcaccggca |
18812456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 37727630 - 37727729
Alignment:
| Q |
76 |
acttgaattccacatcaatacaaaaaggagaacctatagtttc---tgaatcaaatagatagaactattgttagcagagaacacagttcacagaaacaag |
172 |
Q |
| |
|
||||||||||||| ||||||||||||||| | || |||||||| |||||| |||| ||| ||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
37727630 |
acttgaattccacgtcaatacaaaaaggaaagcccatagtttctgatgaatcgaatacatataactattgttagctgataacacagttcaaggaaacaag |
37727729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 29491463 - 29491377
Alignment:
| Q |
164 |
agaaacaagcatgtgctggactatttattagcatttgtgatgataaaagtcatagaaatgaccaaattggcaaattagactagcacc |
250 |
Q |
| |
|
|||||| |||||||||| |||| ||| |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29491463 |
agaaacgagcatgtgctagactttttgttagtatttgtggaaataaaagtcatagaaatgaccaaattggcaaatttgactagcacc |
29491377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University