View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14356_high_34 (Length: 254)

Name: NF14356_high_34
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14356_high_34
NF14356_high_34
[»] chr1 (13 HSPs)
chr1 (17-247)||(47717994-47718224)
chr1 (21-247)||(47760119-47760345)
chr1 (35-245)||(47713218-47713428)
chr1 (23-245)||(47745789-47746011)
chr1 (35-243)||(6521594-6521808)
chr1 (72-245)||(6523594-6523767)
chr1 (158-240)||(6507056-6507138)
chr1 (158-243)||(6512957-6513042)
chr1 (166-247)||(6517364-6517445)
chr1 (211-247)||(47772947-47772983)
chr1 (194-247)||(6500263-6500316)
chr1 (191-239)||(47673751-47673799)
chr1 (74-118)||(47778037-47778081)
[»] chr5 (4 HSPs)
chr5 (79-247)||(28856511-28856679)
chr5 (76-247)||(28861785-28861956)
chr5 (86-247)||(28831322-28831483)
chr5 (182-247)||(27371748-27371813)
[»] scaffold0341 (2 HSPs)
scaffold0341 (158-240)||(1081-1163)
scaffold0341 (158-240)||(8735-8817)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 47717994 - 47718224
Alignment:
Q  17 gaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtttggacaaagttttgtga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47717994 gaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtttggacaaagttttgtga 47718093  T
Q  117 gaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccata 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47718094 gaagaactcttgaatcattgagacaacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccata 47718193  T
Q  217 agagaaattgtagaaaccgtagttgatttct 247  Q
    |||||||||||||||||||||||||||||||    
T  47718194 agagaaattgtagaaaccgtagttgatttct 47718224  T

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Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 47760119 - 47760345
Alignment:
Q  21 cttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtttggacaaagttttgtgagaag 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47760119 cttccataacgccgaatattgatcggtttgagtaacgcaacatgcagttatcataccaaccaattgcttctttttggtttggacaaagttttgtgagaag 47760218  T
Q  121 aactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagag 220  Q
    |||||||||||| |||||| |||| ||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||     
T  47760219 aactcttgaatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggccataagaa 47760318  T
Q  221 aaattgtagaaaccgtagttgatttct 247  Q
    | |||||||||||||||||||||||||    
T  47760319 atattgtagaaaccgtagttgatttct 47760345  T

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Target: chr1; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 35 - 245
Target Start/End: Original strand, 47713218 - 47713428
Alignment:
Q  35 aatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcat 134  Q
    ||||||||| |||||||||||||||||||| ||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713218 aatattgattggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcat 47713317  T
Q  135 tgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaacc 234  Q
    |||||  ||| |||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47713318 tgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaacc 47713417  T
Q  235 gtagttgattt 245  Q
    |||||||||||    
T  47713418 gtagttgattt 47713428  T

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Target: chr1; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 47745789 - 47746011
Alignment:
Q  23 tccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaa 122  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  47745789 tccataatgccaaatattgatcggtttgagtaacgcaacatgcagttatcataccaactaattgcttctttttgggttggacaaagttttgtgagaagaa 47745888  T
Q  123 ctcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaa 222  Q
    |||||||||| |||||| |||| ||||||| ||| ||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||    
T  47745889 ctcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagagaa 47745988  T
Q  223 attgtagaaaccgtagttgattt 245  Q
    |||||||||||||||||||||||    
T  47745989 attgtagaaaccgtagttgattt 47746011  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 6521808 - 6521594
Alignment:
Q  35 aatattgatcggtttgagtaacgcaacatgcagtcaacat------accaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttg 128  Q
    |||||||| ||||||||||||||||||||||| ||  |||      |||| ||||| ||||||||| ||||| ||||| ||| ||| ||||||||  |||    
T  6521808 aatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttg 6521709  T
Q  129 aatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgta 228  Q
    |||  |||||  || || | ||| | |   |||| ||||||||||| || || ||||  |||||||||||||||||||| |  ||||||||| |||| ||    
T  6521708 aatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgtttccataagaggaattata 6521609  T
Q  229 gaaaccgtagttgat 243  Q
    |||||||||||||||    
T  6521608 gaaaccgtagttgat 6521594  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 245
Target Start/End: Complemental strand, 6523767 - 6523594
Alignment:
Q  72 cataccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcc 171  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||      |||||| |||||||  ||||  | ||  |||  |  |||||||| ||    
T  6523767 cataccaaccaattgcttctttttggtttggacaaagctgtgtgagattgttacttgaaccattgaggcaactaagacactcgtttgtcttaacatcgcc 6523668  T
Q  172 tctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgattt 245  Q
    |||||| || ||||  |||||||||||||  |||||||  || |  ||||||||||||||||||||||||||||    
T  6523667 tctgcaaagaccaattgcgtttactttgtttgtgttttcaccgtttgagaaattgtagaaaccgtagttgattt 6523594  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 6507056 - 6507138
Alignment:
Q  158 ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagtt 240  Q
    ||||| ||||||||||| || || ||||  |||||||||||||| ||||||  |||||||||| |||| ||||||||||||||    
T  6507056 ggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagtt 6507138  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 6512957 - 6513042
Alignment:
Q  158 ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgat 243  Q
    ||||| ||||||||||| || || ||||  |||||||||||||| ||||||   ||||||||| |||| |||||||||||||||||    
T  6512957 ggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgat 6513042  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 6517364 - 6517445
Alignment:
Q  166 atctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttct 247  Q
    |||||||||||| || ||||  ||||||||||||||  |||||  |||||||||| | || |||||||||||||||||||||    
T  6517364 atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttct 6517445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 47772983 - 47772947
Alignment:
Q  211 gccataagagaaattgtagaaaccgtagttgatttct 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  47772983 gccatatgagaaattgtagaaaccgtagttgatttct 47772947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 6500263 - 6500316
Alignment:
Q  194 actttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttct 247  Q
    ||||||||  |||||| |||||  || |||||||||||||||||||||||||||    
T  6500263 actttgtcgctgttttcgccatgtgaaaaattgtagaaaccgtagttgatttct 6500316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 47673799 - 47673751
Alignment:
Q  191 tttactttgtcagtgttttggccataagagaaattgtagaaaccgtagt 239  Q
    |||||||||||||  | || |||||| ||||||||||||||||||||||    
T  47673799 tttactttgtcaggttcttcgccatacgagaaattgtagaaaccgtagt 47673751  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 47778081 - 47778037
Alignment:
Q  74 taccaaccaatcgcttctttttggtttggacaaagttttgtgaga 118  Q
    ||||||||||| ||||| |||| |||||||||||||| |||||||    
T  47778081 taccaaccaattgcttcctttttgtttggacaaagttgtgtgaga 47778037  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 247
Target Start/End: Original strand, 28856511 - 28856679
Alignment:
Q  79 accaatcgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcag 178  Q
    |||||| |||||||||| ||||||||||  || ||| ||||||||||||||||  || ||| |||| |||||| | |  || |||||||||||||||||     
T  28856511 accaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcat 28856610  T
Q  179 aggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttct 247  Q
    |  || | ||||| ||||||||   ||| || |||  | ||||| ||||||||||||||| ||||||||    
T  28856611 aatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttct 28856679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 28861785 - 28861956
Alignment:
Q  76 ccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctg 175  Q
    ||||||||| |||||||||||||| |||||   || ||| ||||||||||||||||  || ||| |||| |||||| | |  || |||||||||||||||    
T  28861785 ccaaccaattgcttctttttggttaggacatttttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctg 28861884  T
Q  176 cagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttct 247  Q
    || |  || | ||||| ||||||||   ||| || |||  | ||||| ||||||||||||||| ||||||||    
T  28861885 cataatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttct 28861956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 28831322 - 28831483
Alignment:
Q  86 gcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaa 185  Q
    |||||||||||||||||||||  || ||| ||||||||||||||||  || |||||||  |||||| | |  || |||||||||||||| || |  || |    
T  28831322 gcttctttttggtttggacaattttgtgttagaagaactcttgaattgttaagataacggcggcaatcatttggattaacatctcctctacataatccta 28831421  T
Q  186 cggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttct 247  Q
     ||||| ||||||||   ||  || ||| || ||||| ||||||||||||||| ||||||||    
T  28831422 tggcgtatactttgttgttgcctttgccgtatgagaagttgtagaaaccgtaggtgatttct 28831483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 27371748 - 27371813
Alignment:
Q  182 ccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttct 247  Q
    |||| ||| |||| |||||| | || ||||||||| ||||||||||| ||||||||||| ||||||    
T  27371748 ccaatggcctttattttgtctgggtgttggccatatgagaaattgtaaaaaccgtagttaatttct 27371813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 1081 - 1163
Alignment:
Q  158 ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagtt 240  Q
    ||||| ||||||||||| || || ||||  |||||||||||||| ||||||  |||||||||| |||| ||||||||||||||    
T  1081 ggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagtt 1163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 8735 - 8817
Alignment:
Q  158 ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagtt 240  Q
    ||||| ||||||||||| || || ||||  |||||||||||||| ||||||  |||||||||| |||| ||||||||||||||    
T  8735 ggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagtt 8817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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