View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_high_35 (Length: 251)
Name: NF14356_high_35
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_high_35 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 14226303 - 14226085
Alignment:
| Q |
15 |
aatattgtttggaaggactacatgatgaatgttcattttccgggtattgtgaagcactctatgcgaagtaagatgtaatatgagtcaggagcatgcaatt |
114 |
Q |
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| T |
14226303 |
aatattgtttggaaggactacatgatgaatgttcattttccgggtattgtgaagcactctatgcgaagtaagatgtaatatgagtcaggagcatgcaatt |
14226204 |
T |
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| Q |
115 |
atatcatatcatatctcatttaccaacaaaaactgaagtcacatgaatcaacaatgatnnnnnnnntatatggaatagaaaataaaaatgatgctatgtt |
214 |
Q |
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| T |
14226203 |
atatcatatcatatctcatttaccaacaaaaactgaagtcacatgaatcaacgatgataaaaaaaatatatggaatagaaaataaaaatgatgctatgtt |
14226104 |
T |
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| Q |
215 |
tctttcatagaaaattatt |
233 |
Q |
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| T |
14226103 |
tctttcatagaaaattatt |
14226085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 14220616 - 14220526
Alignment:
| Q |
15 |
aatattgtttggaaggactacatgatgaatgttcattttccgggtattgtgaagcactctatgcgaagtaagatgtaatatgagtcaggag |
105 |
Q |
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| T |
14220616 |
aatattgattggaaggactacatgatgaacgttcattttccaggtcttgtgaagcactctatgcgaagtaagatgtaatatgggccaggag |
14220526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 14218189 - 14218140
Alignment:
| Q |
123 |
tcatatctcatttaccaacaaaaactgaagtcacatgaatcaacaatgat |
172 |
Q |
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| T |
14218189 |
tcatatctcatttactcacgaaaactgaagacacgtgaatcaacaatgat |
14218140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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