View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14356_high_39 (Length: 240)

Name: NF14356_high_39
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14356_high_39
NF14356_high_39
[»] chr6 (2 HSPs)
chr6 (1-226)||(33673628-33673853)
chr6 (150-220)||(33663141-33663211)
[»] chr1 (2 HSPs)
chr1 (9-139)||(20291138-20291268)
chr1 (61-109)||(47527937-47527985)
[»] chr2 (1 HSPs)
chr2 (61-144)||(16427597-16427679)
[»] chr5 (2 HSPs)
chr5 (61-147)||(3261703-3261789)
chr5 (60-100)||(6237652-6237692)
[»] chr3 (2 HSPs)
chr3 (61-109)||(51291720-51291768)
chr3 (61-144)||(47955218-47955301)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33673628 - 33673853
Alignment:
Q  1 cggataattaacggtgttaagttgtaaagggaggtatctgtcaaattatgagacttccgaggaggttaatgtctattataaaattagaggggctgtttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  33673628 cggataattaacggtgttaagttgtaaagggaggtatctttctaattatgagactttggaggaggttaatgtctattataaaattagagggagtgtttgt 33673727  T
Q  101 ttcatttaagaaaattttgagggaggttagtgtaatttaccctaataataataaccgatggaaattaaacttttatactattaacaccagaaaatagaaa 200  Q
    |||||||||||||| |  ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  33673728 ttcatttaagaaaactacgagggaggttagtgtaatttatcctaataataataaccaatggaaattaaacttttatactattaacaccggaaaatagaaa 33673827  T
Q  201 aacatacatatatgatatatacaaaa 226  Q
    ||||||||||||||||||||||||||    
T  33673828 aacatacatatatgatatatacaaaa 33673853  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 33663141 - 33663211
Alignment:
Q  150 aataaccgatggaaattaaacttttatactattaacaccagaaaatagaaaaacatacatatatgatatat 220  Q
    ||||||||||| || |||||| ||| |||||| ||||| |||||||| |||||||||||||||||||||||    
T  33663141 aataaccgatgaaagttaaacctttttactatcaacacaagaaaatataaaaacatacatatatgatatat 33663211  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 20291268 - 20291138
Alignment:
Q  9 taacggtgttaagttgtaaagggaggtatctgtcaaattatgagacttccgaggaggttaatgtctattataaaattagaggggctgtttgtttcattta 108  Q
    |||| ||||||||||||||||||| ||||||||  |||||||| ||||  ||||||||||||||||||||||||| |||||||| ||||||| | |||||    
T  20291268 taacagtgttaagttgtaaagggatgtatctgtttaattatgaaactttggaggaggttaatgtctattataaaactagagggggtgtttgtgttattta 20291169  T
Q  109 agaaaattttgagggaggttagtgtaattta 139  Q
    ||||||  |   ||||||||||||| |||||    
T  20291168 agaaaacctcaggggaggttagtgttattta 20291138  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 47527937 - 47527985
Alignment:
Q  61 ggaggttaatgtctattataaaattagaggggctgtttgtttcatttaa 109  Q
    |||||||||||||||||||||||||||||||| |||  || ||||||||    
T  47527937 ggaggttaatgtctattataaaattagagggggtgtcagtgtcatttaa 47527985  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 16427597 - 16427679
Alignment:
Q  61 ggaggttaatgtctattataaaattagaggggctgtttgtttcatttaagaaaattttgagggaggttagtgtaatttacccta 144  Q
    |||||||||||| ||||  |||| |||||||| |||| || | ||||||||||||||| | |||||| ||||||||||||||||    
T  16427597 ggaggttaatgtttatttcaaaactagagggg-tgttagtgttatttaagaaaattttaaaggaggtgagtgtaatttacccta 16427679  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 3261789 - 3261703
Alignment:
Q  61 ggaggttaatgtctattataaaattagaggggctgtttgtttcatttaagaaaattttgagggaggttagtgtaatttaccctaata 147  Q
    |||||||  |||||||||||||||||||||||  |||||| | |||||| | || ||  ||||||| ||||||||||| ||||||||    
T  3261789 ggaggtttttgtctattataaaattagagggggagtttgtgttatttaaaagaacttcaagggaggctagtgtaattttccctaata 3261703  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 6237652 - 6237692
Alignment:
Q  60 aggaggttaatgtctattataaaattagaggggctgtttgt 100  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  6237652 aggaggttagtgtctattttaaaattagaggggatgtttgt 6237692  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 51291768 - 51291720
Alignment:
Q  61 ggaggttaatgtctattataaaattagaggggctgtttgtttcatttaa 109  Q
    ||||||||||||||||| |||||||||||||| |||||||  |||||||    
T  51291768 ggaggttaatgtctattttaaaattagagggggtgtttgtgccatttaa 51291720  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 47955301 - 47955218
Alignment:
Q  61 ggaggttaatgtctattataaaattagaggggctgtttgtttcatttaagaaaattttgagggaggttagtgtaatttacccta 144  Q
    |||||||||||| ||||  |||| |||||||| |||| ||   ||||||||||| ||  |||||||| ||||||||||||||||    
T  47955301 ggaggttaatgtttatttcaaaactagagggggtgttagtgctatttaagaaaacttcaagggaggtgagtgtaatttacccta 47955218  T

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