View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14356_high_45 (Length: 227)
Name: NF14356_high_45
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_high_45 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 1323323 - 1323100
Alignment:
| Q |
5 |
cagctggaattccttatacttatgtctctgcaaattgttttggtgcatactttgtcaatatcttacttcgtccgtatgagaaaaataaagatattgttgt |
104 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1323323 |
cagctggaatcccttatacttatgtctctgcaaattgttttggtgcatactttgtcaatatcttacttcgtccgtatgagaaaaataaagatattgttgt |
1323224 |
T |
|
| Q |
105 |
ccacggcagcggtcaagttaaaggtacatatttgttttttaccgaagaaaaaatgtgattg-ttttacagaagaaattttgaaagattctcatcaaaatc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1323223 |
ccacggcagcggtcaagttaaaggtacatatttgtttttaaccgaagaaaaaatgtgattgtttttacagaagaaattttgaaagattctcatcaaaatc |
1323124 |
T |
|
| Q |
204 |
aacctttcaaaatagtggtagatt |
227 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1323123 |
aacctttcaaaatagtggtagatt |
1323100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 1337430 - 1337298
Alignment:
| Q |
5 |
cagctggaattccttatacttatgtctctgcaaattgttttggtgcatactttgtcaatatcttacttcgtccgtatgagaaaaataaagatattgttgt |
104 |
Q |
| |
|
|||| ||||| |||||||||| |||||| |||||||||||||||||||||||||| ||| |||| |||||||| ||||| || || |||||||||||||| |
|
|
| T |
1337430 |
cagcaggaatcccttatacttttgtctcagcaaattgttttggtgcatactttgtgaatttcttgcttcgtccttatgaaaacaagaaagatattgttgt |
1337331 |
T |
|
| Q |
105 |
ccacggcagcggtcaagttaaaggtacatattt |
137 |
Q |
| |
|
| ||||||| ||| || |||||||||||||| |
|
|
| T |
1337330 |
ctacggcagtggtgaatccaaaggtacatattt |
1337298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 1263278 - 1263369
Alignment:
| Q |
8 |
ctggaattccttatacttatgtctctgcaaattgttttggtgcatactttgtcaatatcttacttcgtccgtatgagaaaaataaagatatt |
99 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| |||| |||| |||||||||||| || || |||||| |
|
|
| T |
1263278 |
ctgggattccttatacttttgtctctgcaaattgttttggggcatattttgtgaatttcttgcttcatccgtatgagaacaagaaggatatt |
1263369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University