View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14356_high_49 (Length: 210)

Name: NF14356_high_49
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14356_high_49
NF14356_high_49
[»] chr2 (14 HSPs)
chr2 (9-167)||(30024242-30024400)
chr2 (9-167)||(30036297-30036455)
chr2 (9-167)||(30117722-30117880)
chr2 (9-167)||(30230435-30230593)
chr2 (9-167)||(30132479-30132637)
chr2 (9-167)||(30069317-30069475)
chr2 (19-167)||(30791389-30791537)
chr2 (21-167)||(30173148-30173294)
chr2 (19-165)||(30253227-30253373)
chr2 (27-146)||(30182905-30183024)
chr2 (21-146)||(30160742-30160867)
chr2 (59-146)||(30031253-30031340)
chr2 (59-146)||(30225391-30225478)
chr2 (27-146)||(30280705-30280824)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 30024242 - 30024400
Alignment:
Q  9 tccaagaaaattatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatc 108  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  30024242 tccaagaaatttatattgaagaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatc 30024341  T
Q  109 tttgagtttccgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  30024342 tttgagttttcgagatttgtcacaacttagaagcttctctcatggattacataccttgg 30024400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 30036455 - 30036297
Alignment:
Q  9 tccaagaaaattatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatc 108  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  30036455 tccaagaaatttatattgaagaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatc 30036356  T
Q  109 tttgagtttccgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  30036355 tttgagttttcgagatttgtcacaacttagaagcttctctcatggattacataccttgg 30036297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 30117880 - 30117722
Alignment:
Q  9 tccaagaaaattatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatc 108  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  30117880 tccaagaaatttatattgaagaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatc 30117781  T
Q  109 tttgagtttccgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  30117780 tttgagttttcgagatttgtcacaacttagaagcttctctcatggattacataccttgg 30117722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 30230593 - 30230435
Alignment:
Q  9 tccaagaaaattatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatc 108  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  30230593 tccaagaaatttatattgaagaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatc 30230494  T
Q  109 tttgagtttccgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  30230493 tttgagttttcgagatttgtcacaacttagaagcttctctcatggattacataccttgg 30230435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 30132637 - 30132479
Alignment:
Q  9 tccaagaaaattatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatc 108  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  30132637 tccaagaaatttatattgaagaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatc 30132538  T
Q  109 tttgagtttccgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||| || |||||||    
T  30132537 tttgagttttcgagatttgtcacaacttagaagcttctctcatggattacanaccttgg 30132479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 30069317 - 30069475
Alignment:
Q  9 tccaagaaaattatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatc 108  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||| |||||| |||   ||| || ||||||| ||||||||||||||||||||||    
T  30069317 tccaagaaatttatattgaagaatgtggcatggagattattgtagcacaagatgaattggtcaacagatttccaatatttattttcccagaattaacatc 30069416  T
Q  109 tttgagtttccgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||||||||||| ||||||||||||||||||||||||||   ||||||| ||||||||||    
T  30069417 tttgagtttccaagatttgacacaacttcgaagcttctacaatggattacataccttgg 30069475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 30791389 - 30791537
Alignment:
Q  19 ttatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttc 118  Q
    |||||| |||||||||||| |||| ||||||| ||||||||||||||||| ||||| |  ||||||||||||||||||||||||||| ||||||||||||    
T  30791389 ttatatagaagaatgtggcgtagaaattattgtagcacatgatgaaatggttgacagagttccaatacttattttcccagaattaacttctttgagtttc 30791488  T
Q  119 cgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    | |||||||||| |||||||||||||||   ||||||| ||||||||||    
T  30791489 caagatttgacagaacttcgaagcttctactatggatttcataccttgg 30791537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 30173148 - 30173294
Alignment:
Q  21 atattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttccg 120  Q
    |||| ||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||||||  |||||||| ||| ||||||||||| ||  |||  |    
T  30173148 atatagaagaatgtggcatagagattattgtagcacaggatgaaatggctgacacaaatccaaagcttatttttccaaaattaacatctctgtctttaag 30173247  T
Q  121 agatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||| |||||||||||||||||||||| ||||| ||  ||||||||||    
T  30173248 agaattgacacaacttcgaagcttctatcatgcatcacataccttgg 30173294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 30253227 - 30253373
Alignment:
Q  19 ttatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttc 118  Q
    |||||| ||| ||||||||||||||||||| | |||||| ||||||| || ||||||   |||| |||||| |||||||||||||||||||||||||||     
T  30253227 ttatatagaaaaatgtggcatagagattatagtagcacaagatgaaacggctgacactgttccagtacttaatttcccagaattaacatctttgagtttt 30253326  T
Q  119 cgagatttgacacaacttcgaagcttctctcatggattgcatacctt 165  Q
    || |||||||||||||||||||| ||||  | |||||| ||||||||    
T  30253327 cgtgatttgacacaacttcgaagattctaccttggattacatacctt 30253373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 30183024 - 30182905
Alignment:
Q  27 aagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttccgagattt 126  Q
    ||||||||||| | |||||||||| || ||| |||||||||  |||||||  ||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  30183024 aagaatgtggcgttgagattattgtagaacaagatgaaatgtctgacacagttccaatacttaatttcccagaattaacatttttgagttttcgagattt 30182925  T
Q  127 gacacaacttcgaagcttct 146  Q
    || |||||||| ||||||||    
T  30182924 gaaacaacttcaaagcttct 30182905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 30160742 - 30160867
Alignment:
Q  21 atattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttccg 120  Q
    |||| ||| |||||||| ||||||||||||  || ||||||||||| | |||||||  ||||||  ||||||||||| ||||||| ||| |  |||| ||    
T  30160742 atatagaaaaatgtggcgtagagattattgtggctcatgatgaaatagctgacacaattccaatttttattttcccaaaattaacgtctctatgttttcg 30160841  T
Q  121 agatttgacacaacttcgaagcttct 146  Q
    ||| ||| ||||||||||||||||||    
T  30160842 agaattgtcacaacttcgaagcttct 30160867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 30031253 - 30031340
Alignment:
Q  59 gatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttccgagatttgacacaacttcgaagcttct 146  Q
    |||||||||| |||||||  |||||||||| |||||||| ||||||||||||||||| |||||  |||  | |||||| |||||||||    
T  30031253 gatgaaatggctgacacagttccaatacttgttttcccaaaattaacatctttgagtctccgaagtttagctcaacttagaagcttct 30031340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 30225391 - 30225478
Alignment:
Q  59 gatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttccgagatttgacacaacttcgaagcttct 146  Q
    |||||||||| |||||||  |||||||||| |||||||| ||||||||||||||||| |||||  |||  | |||||| |||||||||    
T  30225391 gatgaaatggctgacacagttccaatacttgttttcccaaaattaacatctttgagtctccgaagtttagctcaacttagaagcttct 30225478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 30280705 - 30280824
Alignment:
Q  27 aagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttccgagattt 126  Q
    ||||||||||| ||||||||||||  || ||||||||||| |  ||||||  ||||||  ||||||||||| || |||| ||| |  |||| ||||| ||    
T  30280705 aagaatgtggcgtagagattattgtggctcatgatgaaatagcagacacaattccaatgtttattttcccaaaactaacgtctctatgttttcgagagtt 30280804  T
Q  127 gacacaacttcgaagcttct 146  Q
    | ||||||||||||||||||    
T  30280805 gccacaacttcgaagcttct 30280824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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