View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_high_5 (Length: 544)
Name: NF14356_high_5
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_high_5 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 544
Target Start/End: Complemental strand, 20023723 - 20023182
Alignment:
| Q |
18 |
atagatggcacaacatcaagacaaagataaagcagatgtattgcaggtgactcacatatacagagaagggaatgaagttgcaaataccttagcaaatttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
20023723 |
atagatggcacaacatcaagacaaagataaagcagatgtattgcaggtaactcacatatacagagaagggaatgaagttgtagataccttagcaaatttt |
20023624 |
T |
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| Q |
118 |
gggttatctcttcaagagttaactgtttggcagaatattcctagctttattagggctaactttgttaagaacaaattaggcatgccttctttcagattta |
217 |
Q |
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| T |
20023623 |
gggttatctcttcaagagttaactgttttgcagaatattcctagctttattagggctaactttgttaagaacaaattaggcatgccttctttcagattta |
20023524 |
T |
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| Q |
218 |
aatattactaatggagttttggtttggtcccctccatgttgtatttacttctctcttttctatctatatattttggcaggtcagcaacttagcttcctac |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
20023523 |
aatattactaatggagttttggtttggt-ccctccatgttgtatttacttctctcttttctatctatatattttggtaggtcagcaccttagcttcctac |
20023425 |
T |
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| Q |
318 |
ttttagttt-gnnnnnnnnnnnnnntcacgcacgtacaatttaataaatgtgtacataatacatgaactcttgtctgaacattattccttagagatattt |
416 |
Q |
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|||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20023424 |
ttttggtttaaaaaaaaataaaaaatcactcacgtacaatttaataaatgtgtacataatacatgaactcttgtctgaacatttttccttagagatattt |
20023325 |
T |
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| Q |
417 |
tgatctctagtaaattttacccctcaagcacattgtcggactgattcaac-------------ctttacatttttcaaaattttatacaatcttctctct |
503 |
Q |
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| T |
20023324 |
tgatctctagtaaattttacccctcaagcacactgtcggactgattcaactggccgattcaatctttacatttttcaaaattttatacaatcttctctct |
20023225 |
T |
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| Q |
504 |
--gttcgtcattctcattcttttaccatcatcattattatact |
544 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
20023224 |
ccgttcatcattctcattcttttaccatcatcattattatact |
20023182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 342 - 444
Target Start/End: Complemental strand, 20037178 - 20037078
Alignment:
| Q |
342 |
tcacgcacgtacaatttaataaatgtgtacataatacatgaactcttgtctgaacattattccttagagatattttgatctctagtaaattttacccctc |
441 |
Q |
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|||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
20037178 |
tcacgcacatacaatttaataaatgtgtacataa--caggaacttttgtctgaacattattcctttaagatattttgatctctagtaaattttacgcctc |
20037081 |
T |
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| Q |
442 |
aag |
444 |
Q |
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||| |
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| T |
20037080 |
aag |
20037078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 471 - 544
Target Start/End: Complemental strand, 20036972 - 20036898
Alignment:
| Q |
471 |
acatttttcaaaattttatacaatct-tctctctgttcgtcattctcattcttttaccatcatcattattatact |
544 |
Q |
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|||| ||||||||||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20036972 |
acatatttcaaaattttatataaattctctctctgttcgtaattctcattcttttaccatcatcattattatact |
20036898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 32246337 - 32246234
Alignment:
| Q |
67 |
actcacatatacagagaagggaatgaagttgcaaataccttagcaaattttgggttatctcttcaagagttaactgtttggcagaatattcctagcttta |
166 |
Q |
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|||||||| || |||||||| |||||||||||| |||| || || |||||||| ||||| | ||| | ||||| ||||||||| | ||||| || |||| |
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| T |
32246337 |
actcacatctatagagaaggtaatgaagttgcagatactttggccaattttggtttatcattacaacaattaacagtttggcaggagattccgagtttta |
32246238 |
T |
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| Q |
167 |
ttag |
170 |
Q |
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|||| |
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| T |
32246237 |
ttag |
32246234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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