View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_high_6 (Length: 469)
Name: NF14356_high_6
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Original strand, 29007179 - 29007622
Alignment:
| Q |
20 |
ctcttgacgtgtcgattgcaca--acacaagaaaacgtgtttaagctgaattataagttataatcgaagtgtatttattgtgtaaatgttgttgattaca |
117 |
Q |
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| T |
29007179 |
ctcttgacgtgtcgattgcacagcacacaaaaaaatgtgtttaagctgaattataagttataatcgaagtgtatttattgtgtaaatgttgttgattgca |
29007278 |
T |
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| Q |
118 |
tttgcatttgaattgtacagggttgatgttatgtgcagttgtgtcgttgagttcaattgagatcttcgaaaggcacgaatggctaaaagtgacttcaact |
217 |
Q |
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| T |
29007279 |
tttgcatttgaattgtacagggttgatgttatgtgcagttgtgtcgttgagttcaattgagatcttcgaaaggcacgagtggctaaaagtgacttcaact |
29007378 |
T |
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| Q |
218 |
gtgtatttcctttgtgaaggtgagaacaagaacgtgtttgaagatgttaagagagctcgttttgtttatgcttacaatggtcaacaatcttggaaggtta |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007379 |
gtgtatttcctttgtgaaggggagaacaagaacgtgtttgaagatgttaagagagctcgttttgtttatgcttacaatggtcaacaatcttggaaggtta |
29007478 |
T |
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| Q |
318 |
gattctattatgcttttttaaaattaagataaatttgattttgtgtccattctaaggtagttcatttgaagttagttaatcaatcgtgtaatacacgtgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007479 |
gattctattatgcttttttaaaattaagataaatttgattttatgtccattctgaggtagttcatttgaagttagttaatcaatcgtgtaatacacgtgt |
29007578 |
T |
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| Q |
418 |
tttagtgtttctgtttacactttcaaatttggttgtatattctt |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29007579 |
tttagtgtttctgtttacactttcaaatttggttgtatgttctt |
29007622 |
T |
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