View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_low_1 (Length: 601)
Name: NF14356_low_1
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 55171633 - 55171047
Alignment:
| Q |
1 |
atgggatccagtcacaggagaaacacgtgctctctcctggttgaagacaagatttgccacaccagagggaagaggtccagttgccatcaggatgactggt |
100 |
Q |
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| T |
55171633 |
atgggatccagtcacaggagaaacacgtgcactctcctggttgaagacaagatttgccacaccagagggaagaggtccagttgccatcaggatgactggt |
55171534 |
T |
|
| Q |
101 |
atgggaaaaggaatgatttgggtgaacggaaaaagcatcggtcgtcactggacgtcattcctctcccctcttggacaacctagtcaaacagagtaccaca |
200 |
Q |
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| T |
55171533 |
atgggaaaaggaatgatttgggtgaacggaaaaagcatcggtcgtcactggatgtcattcctctcccctcttggacaacctagtcaagaagagtaccaca |
55171434 |
T |
|
| Q |
201 |
tcccaagagattacctgaatgcaaaggacaatttgcttgttgtattggaagaggagaagggaagtccagaaaaaatagagataatgattgttgacagaga |
300 |
Q |
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| T |
55171433 |
tcccaagagattacctgaatgcaaaggacaatttgcttgttgtattagaagaggagaagggaagtccagaaaaaatagagataatgattgttgacagaga |
55171334 |
T |
|
| Q |
301 |
tacaatctgcagttacattacagagaacagtcctgccaatgtcaattcttggggatctaagaacggagaatttcgttctgttggcaaaaattctggacca |
400 |
Q |
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| T |
55171333 |
tacaatctgcagttacattacagagaacagtcctgccaatgtcaattcttggggatctaagaacggagaatttcgttctgttggcaaaaattctggacca |
55171234 |
T |
|
| Q |
401 |
caagcttcactgaaatgtcccagcggaaaaaagattgttgctgtcgagtttgcaagctttggtaatcctagtggttactgtggagattttgctattggaa |
500 |
Q |
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| T |
55171233 |
caagcttcactgaaatgtcccagcggcaaaaagattgttgctgtcgagtttgcaagctttggtaatcctagtggttactgtggagattttgctcttggaa |
55171134 |
T |
|
| Q |
501 |
attgtaacggtggtgctgctaagggtgttgttgagaaggcatgcttggggaaagaagaatgtttggttgaagtgaaccgtgcaaact |
587 |
Q |
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| T |
55171133 |
attgtaacggtggtgctgctaagggtgttgttgagaaggcatgcttggggaaagaagaatgtttggttgaagtgaaccgtgcaaact |
55171047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 27724266 - 27724384
Alignment:
| Q |
77 |
ccagttgccatcaggatgactggtatgggaaaaggaatgatttgggtgaacggaaaaagcatcggtcgtcactggacgtcattcctctcccctcttggac |
176 |
Q |
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|||||||||||| | ||| ||||||| |||||||||||||||||| || || ||||||| ||||||||||||| | | |||||| ||||||||| |
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| T |
27724266 |
ccagttgccatcggaatggaaggtatggcaaaaggaatgatttgggttaatggtgaaagcattggtcgtcactggatgagctacctctctcctcttggaa |
27724365 |
T |
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| Q |
177 |
aacctagtcaaacagagta |
195 |
Q |
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| |||| |||| ||||||| |
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| T |
27724366 |
agcctactcaatcagagta |
27724384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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