View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14356_low_10 (Length: 437)

Name: NF14356_low_10
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14356_low_10
NF14356_low_10
[»] chr4 (5 HSPs)
chr4 (18-255)||(55988940-55989177)
chr4 (18-255)||(55324928-55325158)
chr4 (26-255)||(55972696-55972918)
chr4 (348-430)||(55989925-55990007)
chr4 (293-352)||(55989215-55989274)
[»] chr6 (1 HSPs)
chr6 (354-416)||(24269061-24269123)
[»] chr2 (1 HSPs)
chr2 (354-430)||(27909264-27909340)
[»] chr7 (1 HSPs)
chr7 (354-403)||(3604516-3604565)
[»] chr5 (2 HSPs)
chr5 (349-408)||(10876799-10876858)
chr5 (349-408)||(10881870-10881929)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 55988940 - 55989177
Alignment:
Q  18 caaggccggccatatcttcgggaaagacttccctaaccgcagacgagatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttgga 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  55988940 caaggtcggccatatcttcgggaaagacttccctaaccgcagacgagatgtcaggctcgaccagtggtgaattcttgtgacgtattttattatgcttgga 55989039  T
Q  118 agcagctttctgagcaagcttcaaaaatcatgtctgttaagatagtgttcatcatcatattaatggcctcagcagatatagcaatgtcagggtgcacctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  55989040 agcagctttctgagcaagcttcaaaaatcatgtctgttaagatagtgttcatcatcatattaatggcctcagcagatatagcaatgtcaggttgcacctt 55989139  T
Q  218 cttcagaacttggtagatgtatctgttcaactttaaca 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55989140 cttcagaacttggtagatgtatctgttcaactttaaca 55989177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 55324928 - 55325158
Alignment:
Q  18 caaggccggccatatcttcgggaaagacttccctaaccgcagacgagatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttgga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  55324928 caaggccggccatatcttcgggaaagacttccctaaccgcagcggagatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttcga 55325027  T
Q  118 agcagctttctgagcaagcttcaaaaatcatgtctgttaagatagtgttcatcatcatattaatggcctcagcagatatagcaatgtcagggtgcacctt 217  Q
       ||||||||||||||||||| || ||||||||||||||||||||||||||||  || |  |  ||| | ||||||||||||||||||||||| |||||    
T  55325028 ---agctttctgagcaagcttc-aacatcatgtctgttaagatagtgttcatca--at-tccacagccccggcagatatagcaatgtcagggtgaacctt 55325120  T
Q  218 cttcagaacttggtagatgtatctgttcaactttaaca 255  Q
    ||||||||||| ||||||| || |||||||||||||||    
T  55325121 cttcagaacttcgtagatgaatttgttcaactttaaca 55325158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 26 - 255
Target Start/End: Original strand, 55972696 - 55972918
Alignment:
Q  26 gccatatcttcgggaaagacttccctaaccgcagacgagatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagcagctt 125  Q
    ||||| ||||| ||||||||||| | ||||| ||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  55972696 gccatgtcttcaggaaagacttcacaaaccgtagcggatatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagc---tt 55972792  T
Q  126 tctgagcaagcttcaaaaatcatgtctgttaagatagtgttcatcatcatattaatggcctcagcagatatagcaatgtcagggtgcaccttcttcagaa 225  Q
    |||||||||||||||| | ||||||||||||  | ||||||||||||   ||  | ||| ||| |||| |||||||||||||| || |||||||| ||||    
T  55972793 tctgagcaagcttcaaca-tcatgtctgttataagagtgttcatcat---atccagggcttcaccagagatagcaatgtcaggatgaaccttcttaagaa 55972888  T
Q  226 cttggtagatgtatctgttcaactttaaca 255  Q
    ||| |||||||||| |||| ||||||||||    
T  55972889 cttagtagatgtatttgttaaactttaaca 55972918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 348 - 430
Target Start/End: Original strand, 55989925 - 55990007
Alignment:
Q  348 aagcaccccaccaaaaatatgggaagaaagaacttgaagacccaaagtgaaacaatcatgcaagaagggtgctagaataatct 430  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  55989925 aagcaccccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaattatgcaagaagggcgctagaagaatct 55990007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 55989215 - 55989274
Alignment:
Q  293 accggtcgtatcttcagttccattttgtgcgatgattatagggtatttatagattaagca 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55989215 accggtcgtatcttcagttccattttgtgcgatgattatagggtatttatagattaagca 55989274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 354 - 416
Target Start/End: Original strand, 24269061 - 24269123
Alignment:
Q  354 cccaccaaaaatatgggaagaaagaacttgaagacccaaagtgaaacaatcatgcaagaaggg 416  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||    
T  24269061 cccaccaaaaatatgagaagaaagaacttgaagatccaaagtgaaacaattatgcaagaaggg 24269123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 354 - 430
Target Start/End: Complemental strand, 27909340 - 27909264
Alignment:
Q  354 cccaccaaaaatatgggaagaaagaacttgaagacccaaagtgaaacaatcatgcaagaagggtgctagaataatct 430  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| ||| | |||||||||||| ||||||| |||||    
T  27909340 cccaccaaaaatatgagaagaaagaacttgaagacacaaagtgatacatttatgcaagaagggcgctagaagaatct 27909264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 3604516 - 3604565
Alignment:
Q  354 cccaccaaaaatatgggaagaaagaacttgaagacccaaagtgaaacaat 403  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||    
T  3604516 cccaccaaaaatatgagatgaaagaacttgaagacccaaagtgaaacaat 3604565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 10876858 - 10876799
Alignment:
Q  349 agcaccccaccaaaaatatgggaagaaagaacttgaagacccaaagtgaaacaatcatgc 408  Q
    |||| ||||||||||||||| ||||||||||| |||||| ||||||||||| ||| ||||    
T  10876858 agcatcccaccaaaaatatgagaagaaagaacgtgaagatccaaagtgaaataattatgc 10876799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 10881929 - 10881870
Alignment:
Q  349 agcaccccaccaaaaatatgggaagaaagaacttgaagacccaaagtgaaacaatcatgc 408  Q
    |||| ||||||||||||||| ||||||||||| |||||| ||||||||||| ||| ||||    
T  10881929 agcatcccaccaaaaatatgagaagaaagaacgtgaagatccaaagtgaaataattatgc 10881870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University