View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_low_11 (Length: 402)
Name: NF14356_low_11
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 7639626 - 7639980
Alignment:
| Q |
18 |
gcattgtgtaccatgttttgaggttaagaaatacta--atattacttatgtccattgacttgtttattaatttatttttatgtagggatctgtgtcgttc |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
7639626 |
gcattgcgtaccatgttttgaggttaagaaatactataatattacttatgtccattgacttgttcattaatttatttttatgtagggatctgtgtcattc |
7639725 |
T |
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| Q |
116 |
atacatcttgaagacgactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaac |
215 |
Q |
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| T |
7639726 |
atacatcttgaagacgactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaac |
7639825 |
T |
|
| Q |
216 |
atatccaatttattaattttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcag |
315 |
Q |
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| T |
7639826 |
atatccaatttattaattttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcag |
7639925 |
T |
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| Q |
316 |
aagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
370 |
Q |
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| T |
7639926 |
aagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
7639980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 58 - 370
Target Start/End: Original strand, 7632953 - 7633263
Alignment:
| Q |
58 |
tacttatgtccattgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatcttgaagacgactggccattactttcagtgccttgc |
157 |
Q |
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| T |
7632953 |
tactcatgtccattgacttgtttat--atttatttttctgtagcgatttgagtcattcatggatcttgaagacgactggacattactttcagtgccttac |
7633050 |
T |
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| Q |
158 |
tgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttattaattttgttttaaaaaatgccaaagttt |
257 |
Q |
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| T |
7633051 |
tgtttcgaatattctctcaaatcattttgcgtttcagattttcttggacttgaacaacatatccaatttattaagtttgttttaaaaaatgccagagttt |
7633150 |
T |
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| Q |
258 |
tagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaagctgtatgccccgaaagctgtctcatgac |
357 |
Q |
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|||||||||||||||||||||||||||| || ||| |||| ||| |||||||||| |||||||||| |||||||| |||| |||||||||||||||| |
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| T |
7633151 |
tagaagagatccggatagtgtgttcgagcgacatattaactgatcgagataatatcaaaagccagttggaagctgtagtccccaaaagctgtctcatgac |
7633250 |
T |
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| Q |
358 |
atttcagtagaca |
370 |
Q |
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||||| ||||||| |
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| T |
7633251 |
atttctgtagaca |
7633263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 31217585 - 31217525
Alignment:
| Q |
145 |
ttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtgga |
205 |
Q |
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|||| |||||||||||||||||| |||||||||||||| | ||||||||||||||||| |
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| T |
31217585 |
ttcactgccttgctgtttcaaatcttctctcaaatcatgtgatatttcagattttcgtgga |
31217525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 31267847 - 31267815
Alignment:
| Q |
145 |
ttcagtgccttgctgtttcaaatattctctcaa |
177 |
Q |
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| T |
31267847 |
ttcagtgccttgctgtttcaaatcttctctcaa |
31267815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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