View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_low_13 (Length: 388)
Name: NF14356_low_13
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 377
Target Start/End: Complemental strand, 12886600 - 12886239
Alignment:
| Q |
16 |
aaagaaactaccagtttacagagatagctaccaggaatccataaaatatcccatgccccaaaattttggagcaatgagaaattcacagatataacattcc |
115 |
Q |
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| T |
12886600 |
aaagaaactaccagtttacagagatagctaccaggaatccataaaatatcccatgccccaaaattttggaggaatgagaaattcacagatataacattcc |
12886501 |
T |
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| Q |
116 |
caattaatgtctcattattacagcaaatttgcagactttattgaacatccccgactttagaggacaatgccattcgaagctgctcctgagtgtaaaaacg |
215 |
Q |
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| T |
12886500 |
caattaatgtctcattattacagcaaatttgcagactttattgaacatccccgactttagaggacaatgccgctcgaagctgctcctgagtgtaaaaacg |
12886401 |
T |
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| Q |
216 |
actccccattttcacggttgcttgttgtatcatcaaatcatttaccacagacacactggcatggtgcacttctaggtcaagctccattaacgctgccatt |
315 |
Q |
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| T |
12886400 |
actccccattttcacggttgcttgttgtatcatcaaatcatttaccacagacacactggcatggtgcacttctaggtcaagctccattaacgctgccatt |
12886301 |
T |
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| Q |
316 |
aacctcgctgcagggtggtttttcttactgcattggacccttatcattgcatcccaacctat |
377 |
Q |
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| T |
12886300 |
aacctcgctgcagggtggtttttcttactgcattggacccttatcattgcatcccaacctat |
12886239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 374
Target Start/End: Complemental strand, 28081595 - 28081456
Alignment:
| Q |
235 |
gcttgttgtatcatcaaatcatttaccacagacacactggcatggtgcacttctaggtcaagctccattaacgctgccattaacctcgctgcagggtggt |
334 |
Q |
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| T |
28081595 |
gcttgttgaatcatcaaatcattcacaacagacacactagcatgattcacatcaaggtctaattctttcaacgccgccatcaacttcgccgcagggtgat |
28081496 |
T |
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| Q |
335 |
ttttcttactgcattggacccttatcattgcatcccaacc |
374 |
Q |
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| T |
28081495 |
tcttcttgctgcattgaatcctaatcatagcatcccaacc |
28081456 |
T |
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