View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14356_low_14 (Length: 378)

Name: NF14356_low_14
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14356_low_14
NF14356_low_14
[»] chr5 (5 HSPs)
chr5 (12-314)||(6988210-6988512)
chr5 (247-314)||(5465398-5465465)
chr5 (246-304)||(621290-621348)
chr5 (246-304)||(10273267-10273325)
chr5 (257-311)||(10859769-10859823)
[»] chr2 (5 HSPs)
chr2 (228-311)||(1763266-1763349)
chr2 (322-361)||(4683635-4683674)
chr2 (264-307)||(7803896-7803939)
chr2 (228-307)||(3853950-3854030)
chr2 (247-307)||(12110924-12110984)
[»] chr8 (5 HSPs)
chr8 (247-307)||(29970851-29970911)
chr8 (246-307)||(2698219-2698280)
chr8 (228-307)||(36779440-36779519)
chr8 (230-311)||(10368058-10368139)
chr8 (266-307)||(44887441-44887482)
[»] chr6 (2 HSPs)
chr6 (259-307)||(25208723-25208771)
chr6 (250-303)||(1758256-1758309)
[»] chr4 (5 HSPs)
chr4 (322-362)||(33551590-33551630)
chr4 (274-314)||(46382862-46382902)
chr4 (322-362)||(26231967-26232007)
chr4 (247-303)||(12224459-12224515)
chr4 (267-311)||(47004711-47004755)
[»] chr3 (3 HSPs)
chr3 (229-307)||(42644303-42644382)
chr3 (253-311)||(21023221-21023279)
chr3 (274-310)||(24916578-24916614)
[»] chr1 (4 HSPs)
chr1 (264-311)||(47085894-47085941)
chr1 (228-307)||(47981777-47981856)
chr1 (247-307)||(4347039-4347099)
chr1 (228-307)||(5410704-5410784)
[»] scaffold0172 (1 HSPs)
scaffold0172 (247-307)||(15257-15317)
[»] chr7 (1 HSPs)
chr7 (263-307)||(26975300-26975344)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 6988512 - 6988210
Alignment:
Q  12 ataatgataacaaataattgataaataattaaataagattgaaaggaaaacactccgacagaagctggcgtaagttgatattggtgaaagcccaggcacc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  6988512 ataatgataacaaataattgataaataattaaataagattgaaaggaaaatactccgacagaagctggtgtaagttgatattggtgaaagcctaggcacc 6988413  T
Q  112 aatcctgcagcctcgttaggtatcagaaatccattattttcgtctacaccttttaaatttattttagtggattcaattatatatacgaaactagtgtatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6988412 aatcctgcagcctcgttaggtatcagaaatccattattttcgtctacactttttaaatttattttagtggattcaattatatatacgaaactagtgtatg 6988313  T
Q  212 tgtggttgaatttttccgagaattgatttagaggaaattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgtttagat 311  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6988312 tgtggttgaatttttccgagaattgattcagaggaaattgattttgtaaaattgattttaattaaaagtaagttgaatttaaaatgatttatgtttagat 6988213  T
Q  312 gta 314  Q
    |||    
T  6988212 gta 6988210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 5465398 - 5465465
Alignment:
Q  247 aattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgtttagatgta 314  Q
    |||||| ||||||||| ||||||||  ||||||| | ||||||  |||||||||||||||||||||||    
T  5465398 aattgattttgtaaaattgattttagataaaagtgaattgaatgaaaaatgatttatgtttagatgta 5465465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 621290 - 621348
Alignment:
Q  246 aaattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatg 304  Q
    ||||||| ||||||||| |||||||  |||||| | ||||||||||||| |||||||||    
T  621290 aaattgattttgtaaaattgattttggttaaaattcagttgaatttaaagtgatttatg 621348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 10273267 - 10273325
Alignment:
Q  246 aaattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatg 304  Q
    ||||||| ||||||||| | |||||| ||| |||| |||||||| ||||||||||||||    
T  10273267 aaattgattttgtaaaattaattttacttataagtgagttgaatataaaatgatttatg 10273325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 10859769 - 10859823
Alignment:
Q  257 gtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgtttagat 311  Q
    |||||| ||||| ||| ||||||||||||||||  ||| ||||||||||||||||    
T  10859769 gtaaaattgattataactaaaagtaagttgaatgcaaagtgatttatgtttagat 10859823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 1763349 - 1763266
Alignment:
Q  228 cgagaattgatttagaggaaattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgtttagat 311  Q
    ||||||||||||| ||  ||||||| ||||||||| |||||||  |||||| | ||||||||||||| ||||||||||||||||    
T  1763349 cgagaattgattttgataaaattgattttgtaaaattgattttggttaaaattgagttgaatttaaagtgatttatgtttagat 1763266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 4683674 - 4683635
Alignment:
Q  322 agcattgctcacgcacctcatcgtacaacgacataacttt 361  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  4683674 agcattgctcatgcacctcatagtacaacgacataacttt 4683635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 7803896 - 7803939
Alignment:
Q  264 tgattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    |||||||||||||||||| |||||||  ||||||||||||||||    
T  7803896 tgattttaattaaaagtaggttgaatgaaaaatgatttatgttt 7803939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 3854030 - 3853950
Alignment:
Q  228 cgagaattgatttagaggaaattgaatttg-taaaactgattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    |||||||||| || || | |||||| |||| || || ||||||| ||||||||| |||||||| |||| ||||||||||||    
T  3854030 cgagaattgagtttgatggaattgattttgatagaattgattttgattaaaagtgagttgaatgtaaattgatttatgttt 3853950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 12110984 - 12110924
Alignment:
Q  247 aattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    |||||| ||||| ||| |||||||  |||||||| |||||||| |||| ||||||||||||    
T  12110984 aattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgttt 12110924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 29970911 - 29970851
Alignment:
Q  247 aattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    ||||||||||||| || |||||||| |||||||| |||||| |||||| ||||||||||||    
T  29970911 aattgaatttgtataattgattttagttaaaagtgagttgagtttaaagtgatttatgttt 29970851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 2698280 - 2698219
Alignment:
Q  246 aaattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    ||||||| |||||||||| ||||||| |||||||| ||||||  ||||||||||||| ||||    
T  2698280 aaattgattttgtaaaaccgattttacttaaaagtgagttgatattaaaatgatttaagttt 2698219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 36779519 - 36779440
Alignment:
Q  228 cgagaattgatttagaggaaattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    ||||||||||||| ||   |||||| |||||| || ||||||| ||||||||| |||||||| |||| | ||||||||||    
T  36779519 cgagaattgattttgatataattgattttgtagaattgattttgattaaaagtgagttgaatgtaaagtaatttatgttt 36779440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 10368139 - 10368058
Alignment:
Q  230 agaattgatttagaggaaattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgtttagat 311  Q
    ||||||||||| |||  |||||  ||||||||| ||||||| | ||||||| |||||||  |||| |||||| |||||||||    
T  10368139 agaattgattttgagtgaattgtttttgtaaaattgattttgagtaaaagtgagttgaaggtaaagtgatttgtgtttagat 10368058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 44887441 - 44887482
Alignment:
Q  266 attttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    ||||||||||||| |||||||||| |||||| ||||||||||    
T  44887441 attttaattaaaaataagttgaatgtaaaataatttatgttt 44887482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 25208771 - 25208723
Alignment:
Q  259 aaaactgattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||||||    
T  25208771 aaaattgattttaattaaaagtgagttgaatgtaaaatgatttatgttt 25208723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 1758309 - 1758256
Alignment:
Q  250 tgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttat 303  Q
    ||||||||||||| |||||||| |||||| |||||||||  |||| ||||||||    
T  1758309 tgaatttgtaaaattgattttagttaaaattaagttgaaactaaagtgatttat 1758256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 33551590 - 33551630
Alignment:
Q  322 agcattgctcacgcacctcatcgtacaacgacataactttt 362  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  33551590 agcattgctcacgcacctcatagtacaacgacataactttt 33551630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 46382902 - 46382862
Alignment:
Q  274 taaaagtaagttgaatttaaaatgatttatgtttagatgta 314  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  46382902 taaaagtaagttgaatgtaaaatgatttatgtttagatgta 46382862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 26231967 - 26232007
Alignment:
Q  322 agcattgctcacgcacctcatcgtacaacgacataactttt 362  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  26231967 agcattgctcatgcacctcatagtacaacgacataactttt 26232007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 12224515 - 12224459
Alignment:
Q  247 aattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttat 303  Q
    |||||| ||||||||| | |||||| |||||||||||||||||  ||||| ||||||    
T  12224515 aattgattttgtaaaatttattttagttaaaagtaagttgaatgcaaaataatttat 12224459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 47004755 - 47004711
Alignment:
Q  267 ttttaattaaaagtaagttgaatttaaaatgatttatgtttagat 311  Q
    |||||||||||| |||||| ||| |||||| ||||||||||||||    
T  47004755 ttttaattaaaaataagtttaatataaaattatttatgtttagat 47004711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 42644382 - 42644303
Alignment:
Q  229 gagaattgatttagaggaaattgaatttgtaaaact-gattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    |||||||||||| |||  |||||| ||| ||||| | ||||||| |||||||| |||||||| |||| ||||||||||||    
T  42644382 gagaattgattttgagtgaattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgttt 42644303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 21023221 - 21023279
Alignment:
Q  253 atttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgtttagat 311  Q
    |||||||||| |||||||  ||||| || |||||||||| || ||||||||||||||||    
T  21023221 atttgtaaaattgattttggttaaatgtgagttgaatttgaagtgatttatgtttagat 21023279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 24916614 - 24916578
Alignment:
Q  274 taaaagtaagttgaatttaaaatgatttatgtttaga 310  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  24916614 taaaagtgagttgaatgtaaaatgatttatgtttaga 24916578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 47085941 - 47085894
Alignment:
Q  264 tgattttaattaaaagtaagttgaatttaaaatgatttatgtttagat 311  Q
    ||||||||||||||||| |||||||| | || ||||||||||||||||    
T  47085941 tgattttaattaaaagtgagttgaatgtgaattgatttatgtttagat 47085894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 47981777 - 47981856
Alignment:
Q  228 cgagaattgatttagaggaaattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    |||||||||||||  |  ||||||| ||||||||| | |||||  |||||| | ||||||||||||| ||||||||||||    
T  47981777 cgagaattgattttaataaaattgattttgtaaaattaattttggttaaaattgagttgaatttaaagtgatttatgttt 47981856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 4347099 - 4347039
Alignment:
Q  247 aattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    |||||| |||||| || |||||||  |||||||| |||||||| |||| ||||||||||||    
T  4347099 aattgattttgtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgttt 4347039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 5410784 - 5410704
Alignment:
Q  228 cgagaattgatttagaggaaattgaatttgtaa-aactgattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    ||||||||||||| ||   ||||||||||| || || ||||||| ||||||||| ||||| || |||| ||||||||||||    
T  5410784 cgagaattgattttgatataattgaatttgaaagaattgattttgattaaaagtgagttggatgtaaattgatttatgttt 5410704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 15257 - 15317
Alignment:
Q  247 aattgaatttgtaaaactgattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    |||||| ||||| ||| |||||||  |||||||| |||||||| |||| ||||||||||||    
T  15257 aattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgttt 15317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 26975300 - 26975344
Alignment:
Q  263 ctgattttaattaaaagtaagttgaatttaaaatgatttatgttt 307  Q
    ||||||||| ||| |||| |||||||| |||||||||||||||||    
T  26975300 ctgattttagttataagtgagttgaatgtaaaatgatttatgttt 26975344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University