View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14356_low_21 (Length: 326)

Name: NF14356_low_21
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14356_low_21
NF14356_low_21
[»] chr1 (15 HSPs)
chr1 (3-311)||(32156301-32156605)
chr1 (27-311)||(32166667-32166949)
chr1 (173-311)||(32163619-32163757)
chr1 (7-126)||(27362515-27362634)
chr1 (28-119)||(32164011-32164102)
chr1 (27-113)||(27261831-27261917)
chr1 (27-113)||(27339752-27339838)
chr1 (31-113)||(27320815-27320897)
chr1 (253-311)||(27362749-27362807)
chr1 (180-311)||(27333904-27334035)
chr1 (66-119)||(27333799-27333852)
chr1 (195-312)||(27336459-27336576)
chr1 (235-311)||(27319744-27319820)
chr1 (197-312)||(27261433-27261548)
chr1 (235-311)||(27276188-27276264)
[»] chr4 (2 HSPs)
chr4 (195-311)||(44291981-44292097)
chr4 (23-119)||(44291814-44291910)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 3 - 311
Target Start/End: Complemental strand, 32156605 - 32156301
Alignment:
Q  3 atgctgatagtaactcattcttcttttcaggatccagtttgtgggagtgcacattgtggattagcatcctattggagcaagaaactaggaaagtgtgatt 102  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32156605 atgctgatagtaactcatttttcttttcaggatccagtttgtgggagtgcacattgtggattggcatcctattggagcaagaaactaggaaagtgtgatt 32156506  T
Q  103 taaaggcttatcaggtagtactattattactatctatcttttctattccctcattatgattatttttgttattgtggtactaaattttagaatacatttg 202  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32156505 taaaggcttatcaggtagtactattattactatct----tttctattccctcattatgattatttttgttattgtggtactaaattttagattacatttg 32156410  T
Q  203 ttcaggcatcagctagaggggggattctgaatattcatattggtgaacagaaacaaagagtgtttttgcgtgggaagactgttacagtgatggaagggtg 302  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32156409 ttcaggcatcagctagagggggaattctcaatattcatattgatgaacaaaaacaaagagtgtttttgcgtgggaaggctgttacagtgatggaagggtg 32156310  T
Q  303 tgttttggt 311  Q
    |||||||||    
T  32156309 tgttttggt 32156301  T

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Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 27 - 311
Target Start/End: Complemental strand, 32166949 - 32166667
Alignment:
Q  27 tttcaggatccagtttgtgggagtgcacattgtggattagcatcctattggagcaagaaactaggaaagtgtgatttaaaggcttatcaggtagtactat 126  Q
    ||||||||||| ||||||||||||||||||||||| || ||| ||||||||||||||||  | || ||||||||||||||||||||||||||||||||||    
T  32166949 tttcaggatcctgtttgtgggagtgcacattgtggcttggcaccctattggagcaagaagttggggaagtgtgatttaaaggcttatcaggtagtactat 32166850  T
Q  127 tattactatctatcttttctattccctcattatgattatttttgttattgtggtactaaattttagaatacatttgttcaggcatcagctagagggggga 226  Q
    ||| | || |||||||||||||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  32166849 tat-atta-ctatcttttctattccctcattgtgattatctttgtcattgtggtactaatttttagaatacatttgttcaggcatcagctagagggggaa 32166752  T
Q  227 ttctgaatattcatattggtgaacagaaacaaagagtgtttttgcgtgggaagactgttacagtgatggaagggtgtgttttggt 311  Q
    |||| ||||||||||||| |||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||||    
T  32166751 ttctcaatattcatattgatgaacaaaaacaaagagtttttttgcgtgggaaggctgttacagtgatggaaggatctgttttggt 32166667  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 173 - 311
Target Start/End: Complemental strand, 32163757 - 32163619
Alignment:
Q  173 attgtggtactaaattttagaatacatttgttcaggcatcagctagaggggggattctgaatattcatattggtgaacagaaacaaagagtgtttttgcg 272  Q
    ||||| |||||||| | |||| ||||||||| ||||||||| |||| || ||  |||| ||||||||||||| |||||||||||||||||||||||| ||    
T  32163757 attgttgtactaaactgtagattacatttgtgcaggcatcaactaggggaggagttctcaatattcatattgatgaacagaaacaaagagtgtttttacg 32163658  T
Q  273 tgggaagactgttacagtgatggaagggtgtgttttggt 311  Q
    ||||||| || ||||||| ||||||||||||||||||||    
T  32163657 tgggaaggctattacagttatggaagggtgtgttttggt 32163619  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 27362515 - 27362634
Alignment:
Q  7 tgatagtaactcattcttcttttcaggatccagtttgtgggagtgcacattgtggattagcatcctattggagcaagaaactaggaaagtgtgatttaaa 106  Q
    ||||| ||||||||| ||| || |||||||  || ||||| ||||  |||||||| || |||||||||||||||||||| || ||||| |||||||||||    
T  27362515 tgataataactcatttttcattccaggatcttgtctgtggtagtgtccattgtggtttggcatcctattggagcaagaagcttggaaaatgtgatttaaa 27362614  T
Q  107 ggcttatcaggtagtactat 126  Q
    ||||||||||||| ||||||    
T  27362615 ggcttatcaggtactactat 27362634  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 32164102 - 32164011
Alignment:
Q  28 ttcaggatccagtttgtgggagtgcacattgtggattagcatcctattggagcaagaaactaggaaagtgtgatttaaaggcttatcaggta 119  Q
    |||||||||| |||||||||||||| || ||||| || |||||||||||||||||||| || | ||| ||||||||||||||||||||||||    
T  32164102 ttcaggatcctgtttgtgggagtgcccactgtggcttggcatcctattggagcaagaagctcgaaaaatgtgatttaaaggcttatcaggta 32164011  T

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Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 27261917 - 27261831
Alignment:
Q  27 tttcaggatccagtttgtgggagtgcacattgtggattagcatcctattggagcaagaaactaggaaagtgtgatttaaaggcttat 113  Q
    ||||||||||| ||||||||||||||||||||||| || ||| ||||||||||| ||||||| || |||||||||||||| ||||||    
T  27261917 tttcaggatcctgtttgtgggagtgcacattgtggcttggcaccctattggagcgagaaactggggaagtgtgatttaaaagcttat 27261831  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 27339838 - 27339752
Alignment:
Q  27 tttcaggatccagtttgtgggagtgcacattgtggattagcatcctattggagcaagaaactaggaaagtgtgatttaaaggcttat 113  Q
    ||||||||||| |||||||||| |||||||||||| || ||| ||||||||||| ||||||| || |||||||||||||| ||||||    
T  27339838 tttcaggatcctgtttgtgggactgcacattgtggtttggcaccctattggagcgagaaactggggaagtgtgatttaaaagcttat 27339752  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 27320897 - 27320815
Alignment:
Q  31 aggatccagtttgtgggagtgcacattgtggattagcatcctattggagcaagaaactaggaaagtgtgatttaaaggcttat 113  Q
    ||||||| |||||||||| |||||||||||| || ||| ||||||||||| | ||||| || |||||||||||||| ||||||    
T  27320897 aggatcctgtttgtgggactgcacattgtggcttggcaccctattggagcgaaaaactggggaagtgtgatttaaaagcttat 27320815  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 27362749 - 27362807
Alignment:
Q  253 aaacaaagagtgtttttgcgtgggaagactgttacagtgatggaagggtgtgttttggt 311  Q
    ||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||    
T  27362749 aaacaaagagtgtttttgcgtgggaaggctattatagtgatggaagggtgtgttctggt 27362807  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 311
Target Start/End: Original strand, 27333904 - 27334035
Alignment:
Q  180 tactaaattttagaatacatttgttcaggcatcagctagaggggggattctgaatattcatattggtgaacagaaacaaagagtgtttttgcgtgggaag 279  Q
    |||||| || |||| |||||||||  |||||||| ||||||| ||   | | ||||||||||||| |||||| || |||||||||||| | ||||| |||    
T  27333904 tactaatttgtagattacatttgtctaggcatcaactagaggaggagctatcaatattcatattgatgaacaaaatcaaagagtgtttattcgtggaaag 27334003  T
Q  280 actgttacagtgatggaagggtgtgttttggt 311  Q
     || |||| || ||||||||||||||| ||||    
T  27334004 gctattactgttatggaagggtgtgttctggt 27334035  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 27333799 - 27333852
Alignment:
Q  66 gcatcctattggagcaagaaactaggaaagtgtgatttaaaggcttatcaggta 119  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||| |||||    
T  27333799 gcatcctattggagcaagaagctgggaaaatgtgatttaaaggcttatgaggta 27333852  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 312
Target Start/End: Complemental strand, 27336576 - 27336459
Alignment:
Q  195 tacatttgttcaggcatcagctagaggggggattctgaatattcatattggtgaacagaaacaaagagtgtttttgcgtgggaagactgttacagtgatg 294  Q
    ||||||||| ||||||||| ||| ||| ||   ||| || |||||| ||| | ||||||||||||| |||||||||||||||||| | || || |||||     
T  27336576 tacatttgtgcaggcatcaactaaaggaggagctcttaacattcatgttgataaacagaaacaaagggtgtttttgcgtgggaaggccgtaacggtgatt 27336477  T
Q  295 gaagggtgtgttttggtt 312  Q
    ||||||| |||| |||||    
T  27336476 gaagggtatgttctggtt 27336459  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 27319820 - 27319744
Alignment:
Q  235 attcatattggtgaacagaaacaaagagtgtttttgcgtgggaagactgttacagtgatggaagggtgtgttttggt 311  Q
    |||||| ||| | ||||||||||||| ||||||||||||||||||   ||||| ||||| ||||||| |||| ||||    
T  27319820 attcatgttgataaacagaaacaaagggtgtttttgcgtgggaagggcgttacggtgattgaagggtatgttctggt 27319744  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 312
Target Start/End: Complemental strand, 27261548 - 27261433
Alignment:
Q  197 catttgttcaggcatcagctagaggggggattctgaatattcatattggtgaacagaaacaaagagtgtttttgcgtgggaagactgttacagtgatgga 296  Q
    ||||||| ||||||||| ||||||| ||   ||| || |||||| ||| | |||| |||||||| |||||||||||||||||| | || || |||||  |    
T  27261548 catttgtgcaggcatcaactagaggaggagctcttaacattcatgttgataaacaaaaacaaagggtgtttttgcgtgggaaggccgtaacggtgattaa 27261449  T
Q  297 agggtgtgttttggtt 312  Q
    ||||| |||| |||||    
T  27261448 agggtatgttctggtt 27261433  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 27276188 - 27276264
Alignment:
Q  235 attcatattggtgaacagaaacaaagagtgtttttgcgtgggaagactgttacagtgatggaagggtgtgttttggt 311  Q
    |||||| ||| | ||||||||||||| |||||||| |||||||||   ||||| ||||| ||||||| |||| ||||    
T  27276188 attcatgttgataaacagaaacaaagggtgtttttacgtgggaagggcgttactgtgattgaagggtatgttctggt 27276264  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 44291981 - 44292097
Alignment:
Q  195 tacatttgttcaggcatcagctagaggggggattctgaatattcatattggtgaacagaaacaaagagtgtttttgcgtgggaagactgttacagtgatg 294  Q
    ||||||||| ||| ||||| | ||||||||  |||| ||||||||||||| |||||  || |||||||||||||||||||||||  || |||||||||||    
T  44291981 tacatttgtgcagacatcaacaagagggggagttctcaatattcatattgatgaacgcaagcaaagagtgtttttgcgtgggaaagctattacagtgatg 44292080  T
Q  295 gaagggtgtgttttggt 311  Q
    ||||||| |||| ||||    
T  44292081 gaagggtttgttctggt 44292097  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 44291814 - 44291910
Alignment:
Q  23 ttcttttcaggatccagtttgtgggagtgcacattgtggattagcatcctattggagcaagaaactaggaaagtgtgatttaaaggcttatcaggta 119  Q
    ||||||||||||||| |||||||| | ||||||||  ||  | |||||||||||||| ||||| || ||||||||||||||||||||||| ||||||    
T  44291814 ttcttttcaggatcctgtttgtggcactgcacatttaggcatggcatcctattggagtaagaagctgggaaagtgtgatttaaaggcttaccaggta 44291910  T

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