View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14356_low_22 (Length: 325)
Name: NF14356_low_22
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 47067353 - 47067054
Alignment:
| Q |
17 |
ataaactagaggacagtttgcctccacaaggtagagattgactctccaatagagtatcagttgggtgatcgaaactctgccatatgatgctggaaatatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47067353 |
ataaactagaggacagtttgcctccacaaggtagagattgactctccaatagagtatcagttgggtgatcgaaactctgccatatgatgctggaaatatt |
47067254 |
T |
|
| Q |
117 |
attgttgtcatatagtacaaagttcccagaatcaagcatggaggcagaggaagctcttgtattagcattaacaataagcttctgttgtccctgttgatct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47067253 |
attgttgtcatatagtacaaagttcccagaatcaagcatggaggccgaggaagctcttgtattagcattaacaataagcttctgttgtccctgttgatct |
47067154 |
T |
|
| Q |
217 |
gttagtattattgtacccttcatggtaaattgtagctttacagttgaggttactggagggtcatcacggtttgcagttcatactattgtgttgttcatct |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
47067153 |
gttagtattattgtacccttcatggtaaattgtagctttacagttgaggttactggagggtcatcacggtttgcagtccatactattgtgctgttcatct |
47067054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 47076971 - 47077270
Alignment:
| Q |
17 |
ataaactagaggacagtttgcctccacaaggtagagattgactctccaatagagtatcagttgggtgatcgaaactctgccatatgatgctggaaatatt |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47076971 |
ataaactagaggacagttggcctccacaaggcagagattgactctccaataaagtatcagtcgggtgatcgaaactctgccatatgatgctggaaatatt |
47077070 |
T |
|
| Q |
117 |
attgttgtcatatagtacaaagttcccagaatcaagcatggaggcagaggaagctcttgtattagcattaacaataagcttctgttgtccctgttgatct |
216 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47077071 |
atggttgtcatatagtacaaagttcccagaatcaagcatggaggccgaggaagctcttgtattagcattaacaataagcttctgttgtccctgttgatct |
47077170 |
T |
|
| Q |
217 |
gttagtattattgtacccttcatggtaaattgtagctttacagttgaggttactggagggtcatcacggtttgcagttcatactattgtgttgttcatct |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47077171 |
gttagtattattgtacccttcatggtaaattgtagctttacagttgaggttactggagggtcatcacggtttgcagtccatactattgtgttgttcatct |
47077270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University