View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14356_low_24 (Length: 305)

Name: NF14356_low_24
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14356_low_24
NF14356_low_24
[»] chr5 (2 HSPs)
chr5 (139-284)||(4554807-4554952)
chr5 (28-112)||(4555098-4555182)
[»] chr2 (1 HSPs)
chr2 (149-269)||(41519719-41519841)
[»] chr8 (2 HSPs)
chr8 (27-112)||(12350324-12350417)
chr8 (226-271)||(12350114-12350159)
[»] chr1 (3 HSPs)
chr1 (27-112)||(11469362-11469455)
chr1 (137-237)||(4640697-4640798)
chr1 (226-271)||(11469621-11469666)
[»] chr4 (3 HSPs)
chr4 (58-108)||(6247105-6247155)
chr4 (226-271)||(6247326-6247371)
chr4 (27-59)||(22499528-22499560)
[»] chr6 (1 HSPs)
chr6 (27-59)||(34034630-34034662)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 139 - 284
Target Start/End: Complemental strand, 4554952 - 4554807
Alignment:
Q  139 atctactacctcatacacggttcttcattttaatagtgaaattttgccattgaagttgaactgacgatgacaagggaatggttttggaaaatcaattttc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4554952 atctactacctcatacacggttcttcattttaatagtgaaattttgctattgaagttgaactgacggtgacaagggaatggttttggaaaatcaattttc 4554853  T
Q  239 ctgggctgataaggtttgaatgagaggaagaaagagacttgaagca 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4554852 ctgggctgataaggtttgaatgagaggaagaaagagacttgaagca 4554807  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 4555182 - 4555098
Alignment:
Q  28 ttggattggatttgggtgtggtttttcagttttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtatgaat 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4555182 ttggattggatttgggtgtggtttttcaattttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtatgaat 4555098  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 149 - 269
Target Start/End: Original strand, 41519719 - 41519841
Alignment:
Q  149 tcatacacggttcttcattttaatagtgaaattttgccattgaagttgaactgacgatgacaagggaatgg--ttttggaaaatcaattttcctgggctg 246  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||| ||| ||||    
T  41519719 tcatacatggttcttcattttaattgtgaaattttgccattgaaattgaactgacggtgacaagggaatggttttttggaaaatcaatttttctgtgctg 41519818  T
Q  247 ataaggtttgaatgagaggaaga 269  Q
    | |||||||||| ||||||||||    
T  41519819 acaaggtttgaaggagaggaaga 41519841  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 12350417 - 12350324
Alignment:
Q  27 cttggattggatttgggtgtggtttttcagttt--------tgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtatgaat 112  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12350417 cttggattggatttgggtgtggtttttcagtttgtgggatttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtatgaat 12350324  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 12350159 - 12350114
Alignment:
Q  226 aaaatcaattttcctgggctgataaggtttgaatgagaggaagaaa 271  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||    
T  12350159 aaaatcaattttcctaagcttataaggtttgaatgagaggaagaaa 12350114  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 11469362 - 11469455
Alignment:
Q  27 cttggattggatttgggtgtggtttttcagttt--------tgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtatgaat 112  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11469362 cttggattggatttgggtgtggtttttcagtttgagggatttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtatgaat 11469455  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 4640798 - 4640697
Alignment:
Q  137 ggatctactacctcatacacggttcttcattttaatagtgaaattttgccattgaagttgaactgacgatgacaagggaatgg-ttttggaaaatcaatt 235  Q
    |||| |||||||||||||| |||||||  ||||||| ||||||||||| ||||||| ||  | ||||  ||| |||| ||||| ||||||||||||||||    
T  4640798 ggatttactacctcatacatggttctttgttttaattgtgaaattttgtcattgaaatttcaatgacagtgataaggcaatggattttggaaaatcaatt 4640699  T
Q  236 tt 237  Q
    ||    
T  4640698 tt 4640697  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 11469621 - 11469666
Alignment:
Q  226 aaaatcaattttcctgggctgataaggtttgaatgagaggaagaaa 271  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||    
T  11469621 aaaatcaattttcctaagctaataaggtttgaatgagaggaagaaa 11469666  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 6247105 - 6247155
Alignment:
Q  58 tttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6247105 tttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtat 6247155  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 6247326 - 6247371
Alignment:
Q  226 aaaatcaattttcctgggctgataaggtttgaatgagaggaagaaa 271  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  6247326 aaaatcaattttcctgagctgataaggtttgaatgagaggaagaaa 6247371  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 22499528 - 22499560
Alignment:
Q  27 cttggattggatttgggtgtggtttttcagttt 59  Q
    ||||||||| |||||||||||||||||||||||    
T  22499528 cttggattgaatttgggtgtggtttttcagttt 22499560  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 34034662 - 34034630
Alignment:
Q  27 cttggattggatttgggtgtggtttttcagttt 59  Q
    |||||||||||||||||||||||||||||||||    
T  34034662 cttggattggatttgggtgtggtttttcagttt 34034630  T

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